DESCRIPTION

Package: doubletree
Type: Package
Title: Nested Latent Class Models for Domain-Adaptive and Semisupervised Learning of Cause-of-Deaths using Verbal Autopsy
Version: 0.5.0.2
Date: 2021-11-25
Authors@R: c(
  person("Zhenke", "Wu", email="zhenkewu@umich.edu",role=c("cre","aut"),
         comment = c(ORCID = "0000-0001-7582-669X")))
Maintainer: Zhenke Wu <zhenkewu@umich.edu>
Description: This package implements variational algorithm to probablistically
    assign cause-of-death using multivariate binary data (verbal autopsy). The model
    is for semi-supervised learning of unobserved causes of deaths for
    subjects in a target domain using data from training domains. The model is equipped
    with two components of the prior: 1) a tree-structured prior that promotes similarity in the
    conditional dependence structure amongst domains, and 2) a tree-structured prior
    that promotes similarity in the class response probability profiles amongst causes.
Depends:
  R(>= 3.5.0)
Imports:
  matrixStats(>= 0.52.2),
  Rcpp(>= 0.12.15),
  stats(>= 3.4.1),
  graphics(>= 3.4.1),
  grDevices(>= 3.4.1),
  BayesLCA(>= 1.9),
  poLCA(>= 1.4.1),
  ggtree(>= 2.0.1),
  igraph(>= 1.2.5),
  foreach (>= 1.5.0),
  ggplot2 (>= 3.2.1),
  R.utils (>= 2.9.2),
  Matrix (>= 1.2-17),
  RColorBrewer(>= 1.1-2),
  MASS(>= 7.3),
  ape(>= 5.4-1),
  reshape2(>= 1.4.4),
  lotR(>= 0.8.1)
Suggests:
  knitr,
  testthat,
  bibtex,
  rmarkdown,
  ars(>= 0.5),
  RcppArmadillo(>= 0.8.300.1.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Remotes: cran/knitcitations, zhenkewu/lotR
RoxygenNote: 7.2.3
URL: https://github.com/zhenkewu/doubletree
BugReports: https://github.com/zhenkewu/doubletree/issues
LinkingTo: Rcpp, RcppArmadillo
Roxygen: list(markdown = TRUE)