updated make.jl to new standart

docs/Project.toml

@@ -1,5 +1,6 @@
 [deps]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
 
 [compat]
 julia = "1.6"

docs/make.jl

@@ -7,29 +7,99 @@ import Pkg;
 Pkg.develop(path = joinpath(@__DIR__, "../../FMIFlux.jl"));
 using Documenter, FMIFlux
 using Documenter: GitHubActions
+using Suppressor
 
-makedocs(
+example_pages = [
+    "Overview" => joinpath("examples", "overview.md"),
+    "Simple CS-NeuralFMU" => joinpath("examples", "simple_hybrid_CS.md"),
+    "Simple ME-NeuralFMU" => joinpath("examples", "simple_hybrid_ME.md"),
+    "Growing Horizon ME-NeuralFMU" => joinpath("examples", "growing_horizon_ME.md"),
+    "JuliaCon 2023" => joinpath("examples", "juliacon_2023.md"),
+    "MDPI 2022" => joinpath("examples", "mdpi_2022.md"),
+    "Modelica Conference 2021" => joinpath("examples", "modelica_conference_2021.md"),
+    "Pluto Workshops" => joinpath("examples", "workshops.md"),
+]
+
+#check if all md files in examples are included in docs
+for md in readdir(joinpath("docs", "src", "examples"))
+    if endswith(md, ".md") &&
+       !occursin("README", md) &&
+       all([!endswith(file, md) for (x, file) in example_pages])
+        print(
+            string(
+                "::warning title=Example-Warning::example \"",
+                md,
+                "\" is not included in the doc-manual\r\n",
+            ),
+        )
+    end
+end
+
+#remove any example pages, for witch the example can not be found
+# and remove svgs if md building failed
+for (x, md) in deepcopy(example_pages)
+    # check if file is missing
+    if !(any([occursin(file, md) for file in readdir(joinpath("docs", "src", "examples"))]))
+        print(
+            string(
+                "::warning title=Example-Warning::example-page \"",
+                md,
+                "\" is to be included in the doc-manual, but could not be found on the examples branch or in \"docs/src/examples\"\r\n",
+            ),
+        )
+        filter!(e -> e ≠ (x => md), example_pages)
+    else
+        # removal of svgs is here if there is xml data in the md
+        r = open(joinpath("docs", "src", md), "r")
+        s = read(r, String)
+        close(r)
+        if occursin("<svg", s) && occursin("</svg>", s)
+            print(
+                string(
+                    "::warning title=SVG-Warning::example-page \"",
+                    md,
+                    "\" has svg-xml text in it. Most likely, linking of support-files generated by jupyter is broken\"\r\n",
+                ),
+            )
+            # regex replace exeeds stack limit: s = replace(s, r"\<\?xml(?!<\/svg>)(.|\n)*?<\/svg>" => "")
+            # so take iterative approach:
+            while occursin("<?xml", s) && occursin("</svg>", s)
+                a = findfirst("<?xml", s)[1] - 1
+                b = findfirst("</svg>", s)[end] + 1
+                s = string(s[1:a], s[b:end])
+            end
+            w = open(joinpath("docs", "src", md * "tmp"), "w+")
+            write(w, s)
+            close(w)
+        end
+        if isfile(joinpath("docs", "src", md * "tmp"))
+            mv(
+                joinpath("docs", "src", md * "tmp"),
+                joinpath("docs", "src", md),
+                force = true,
+            )
+        end
+    end
+end
+
+my_makedocs() = makedocs(
     sitename = "FMIFlux.jl",
     format = Documenter.HTML(
         collapselevel = 1,
         sidebar_sitename = false,
         edit_link = nothing,
-        size_threshold_ignore = [joinpath("examples", "juliacon_2023.md", "modelica_conference_2021.md", "simple_hybrid_CS.md","simple_hybrid_ME.md")],
+        size_threshold = 512000,
+        size_threshold_ignore = [
+        ],
     ),
-    warnonly = true,
+    modules = [FMIFlux],
+    checkdocs = :exports,
+    linkcheck = true,
+    warnonly = :linkcheck,
     pages = Any[
         "Introduction" => "index.md"
-        "Examples" => [
-            "Overview" => "examples/overview.md"
-            "Simple CS-NeuralFMU" => "examples/simple_hybrid_CS.md"
-            "Simple ME-NeuralFMU" => "examples/simple_hybrid_ME.md"
-            #"Growing Horizon ME-NeuralFMU" => "examples/growing_horizon_ME.md"
-            "JuliaCon 2023" => "examples/juliacon_2023.md"
-            #"MDPI 2022" => "examples/mdpi_2022.md"
-            "Modelica Conference 2021" => "examples/modelica_conference_2021.md"
-            "Pluto Workshops" => "examples/workshops.md"
-        ]
         "FAQ" => "faq.md"
+        "Examples" => example_pages
         "Library Functions" => "library.md"
         "Related Publication" => "related.md"
         "Contents" => "contents.md"
@@ -46,6 +116,23 @@ function deployConfig()
     return GitHubActions(github_repository, github_event_name, github_ref)
 end
 
+output = ""
+try
+    global output = @capture_err begin
+        my_makedocs()
+    end
+catch e
+    my_makedocs() # if it fails, re-run without capturing, so that its stderr appears in the console/logs
+end
+
+# errors = findall(r"Error:.*", output)
+warns = findall(r"Warning:.*", output)
+
+for w in warns
+    s = string("::warning title=Documenter-Warning::", output[w], "\r\n")
+    print(s)
+end
+
 deploydocs(
     repo = string("github.com/", get(ENV, "GITHUB_REPOSITORY", ""), "git"),
     devbranch = "main",