updated make.jl to new standart

docs/make.jl

@@ -7,28 +7,90 @@ import Pkg;
 Pkg.develop(path = joinpath(@__DIR__, "../../FMIFlux.jl"));
 using Documenter, FMIFlux
 using Documenter: GitHubActions
+using Suppressor
 
-makedocs(
+example_pages = [
+    "Overview" => "examples/overview.md",
+    "Simple CS-NeuralFMU" => "examples/simple_hybrid_CS.md",
+    "Simple ME-NeuralFMU" => "examples/simple_hybrid_ME.md",
+    "Growing Horizon ME-NeuralFMU" => "examples/growing_horizon_ME.md",
+    "JuliaCon 2023" => "examples/juliacon_2023.md",
+    "MDPI 2022" => "examples/mdpi_2022.md",
+    "Modelica Conference 2021" => "examples/modelica_conference_2021.md",
+    "Pluto Workshops" => "examples/workshops.md",
+]
+
+#check if all md files in examples are included in docs
+for md in readdir("docs/src/examples")
+    if endswith(md, ".md") &&
+       !occursin("README", md) &&
+       all([!endswith(file, md) for (x, file) in example_pages])
+        print(
+            string(
+                "::warning title=Example-Warning::example \"",
+                md,
+                "\" is not included in the doc-manual\r\n",
+            ),
+        )
+    end
+end
+
+#remove any example pages, for witch the example can not be found
+# and remove svgs if md building failed
+for (x, md) in deepcopy(example_pages)
+    if !(any([occursin(file, md) for file in readdir("docs/src/examples")]))
+        print(
+            string(
+                "::warning title=Example-Warning::example-page \"",
+                md,
+                "\" is to be included in the doc-manual, but could not be found on the examples branch or in \"docs/src/examples\"\r\n",
+            ),
+        )
+        filter!(e -> e ≠ (x => md), example_pages)
+    end
+    # removal of svgs is here if there is xml data in the md
+    r = open(joinpath("docs", "src", md), "r")
+    s = read(r, String)
+    if occursin("<svg", s) && occursin("<\\svg>", s)
+        print(
+            string(
+                "::warning title=SVG-Warning::example-page \"",
+                md,
+                "\" has svg-xml text in it. Most likely, linking of support-files generated by jupyter is broken\"\r\n",
+            ),
+        )
+        w = open(joinpath("docs", "src", md, "tmp"), "w+")
+        replace!(s, r"\<\?xml(?!<\\svg>)(.|\n)*?<\/svg>" => "")
+        write(w, s)
+        close(w)
+    end
+    close(r)
+    if isfile(joinpath("docs", "src", md, "tmp"))
+        mv(joinpath("docs", "src", md, "tmp"), joinpath("docs", "src", md), force = true)
+    end
+end
+
+my_makedocs() = makedocs(
     sitename = "FMIFlux.jl",
     format = Documenter.HTML(
         collapselevel = 1,
         sidebar_sitename = false,
         edit_link = nothing,
-        size_threshold_ignore = [joinpath("examples", "juliacon_2023.md", "modelica_conference_2021.md", "simple_hybrid_CS.md","simple_hybrid_ME.md")],
+        size_threshold = 512000,
+        size_threshold_ignore = [
+            "examples/juliacon_2023.md",
+            "examples/modelica_conference_2021.md",
+            "examples/simple_hybrid_CS.md",
+            "examples/simple_hybrid_ME.md",
+        ],
     ),
-    warnonly = true,
+    modules = [FMIFlux],
+    checkdocs = :exports,
+    linkcheck = true,
+    warnonly = :linkcheck,
     pages = Any[
         "Introduction" => "index.md"
-        "Examples" => [
-            "Overview" => "examples/overview.md"
-            "Simple CS-NeuralFMU" => "examples/simple_hybrid_CS.md"
-            "Simple ME-NeuralFMU" => "examples/simple_hybrid_ME.md"
-            #"Growing Horizon ME-NeuralFMU" => "examples/growing_horizon_ME.md"
-            "JuliaCon 2023" => "examples/juliacon_2023.md"
-            #"MDPI 2022" => "examples/mdpi_2022.md"
-            "Modelica Conference 2021" => "examples/modelica_conference_2021.md"
-            "Pluto Workshops" => "examples/workshops.md"
-        ]
+        "Examples" => example_pages
         "FAQ" => "faq.md"
         "Library Functions" => "library.md"
         "Related Publication" => "related.md"
@@ -46,6 +108,23 @@ function deployConfig()
     return GitHubActions(github_repository, github_event_name, github_ref)
 end
 
+output = ""
+try
+    global output = @capture_err begin
+        my_makedocs()
+    end
+catch e
+    my_makedocs() # if it fails, re-run without capturing, so that its stderr appears in the console/logs
+end
+
+# errors = findall(r"Error:.*", output)
+warns = findall(r"Warning:.*", output)
+
+for w in warns
+    s = string("::warning title=Documenter-Warning::", output[w], "\r\n")
+    print(s)
+end
+
 deploydocs(
     repo = string("github.com/", get(ENV, "GITHUB_REPOSITORY", ""), "git"),
     devbranch = "main",