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HAP

crit.py

return evaluation value. param: left, right, other

haplo.sh

counthap, sam -> (syuukeifilename.py, mk_haplo_fasta.pl) -> contigs.fasta

mk_haplo_fasta.py

alternative for mk_haplo_fasta.pl

assign_haplo.py

assign "10X blocks" to each allele

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assign reads to alleles

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