Reading compatibility #62
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| name: Tests | |
| # Test on all pushes, except when the push is literally just a tag (because we | |
| # tag automatically via CI, and therefore there's no extra code in that push). | |
| # Also, only test on pull requests into master/production. | |
| on: | |
| push: | |
| tags-ignore: | |
| - 'v*' | |
| pull_request: | |
| branches: | |
| - 'master' | |
| - 'production' | |
| jobs: | |
| tests: | |
| if: "!contains(github.event.pull_request.labels.*.name, 'auto-pr')" | |
| env: | |
| ENV_NAME: tests | |
| PYTHON: ${{ matrix.python-version }} | |
| OS: ${{ matrix.os }} | |
| CC: gcc | |
| name: Testing | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.11"] | |
| tutorial: ["coeval_cubes", "gather_data", "lightcones"] | |
| defaults: | |
| run: | |
| # Adding -l {0} ensures conda can be found properly in each step | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| fetch-depth: 0 | |
| - name: Print head git commit message | |
| id: get_head_commit_message | |
| run: echo "commit_message=$(git show -s --format=%s)" >> "$GITHUB_ENV" | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| # auto-update-conda: true | |
| mamba-version: "*" | |
| channels: conda-forge,defaults | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ci/${{ matrix.os }}-env.yml | |
| activate-environment: tests | |
| channel-priority: true | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Make it a Debug Run | |
| if: "contains(env.commit_message, 'ci debug')" | |
| run: | | |
| echo "log_level=ULTRA_DEBUG" >> $GITHUB_ENV | |
| - name: Make it a Normal Run | |
| if: "!contains(env.commit_message, 'ci debug')" | |
| run: | | |
| echo "log_level=INFO" >> $GITHUB_ENV | |
| - name: Get C Libraries Linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get install libfftw3-dev | |
| sudo apt-get install libgsl0-dev | |
| - name: Setup GCC | |
| uses: Dup4/actions-setup-gcc@v1 | |
| with: | |
| version: latest | |
| - name: Install 21cmFAST Linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| LOG_LEVEL=${{ env.log_level }} pip install . | |
| - name: Install 21cmFAST MacOS | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| LOG_LEVEL=${{ env.log_level }} CFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk" pip install . | |
| - name: Setup papermill | |
| run: | | |
| pip install papermill | |
| pip install ipykernel | |
| python -m ipykernel install --user --name=tests | |
| - name: Run | |
| run: | | |
| TEST_RUN=True papermill -k tests --request-save-on-cell-execute docs/tutorials/${{ matrix.tutorial }}.ipynb ${{ matrix.tutorial }}.ipynb | |
| - name: Archive Notebooks | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: tutorials-${{ matrix.tutorial }} | |
| path: | | |
| ${{ matrix.tutorial }}.ipynb |