v4.0.0

Version 4.0.0 of the MIRACUM-Pipe including WES and tNGS. The TSO500 workflow covers the DNA and RNA parts of the panel.

v4.0.0_beta

Added sequenza subfolder

v3.0.0

Integration of a tumorOnly pipeline;
Bugfixes in the tNGS pipeline.

v2.0.1

smaller bugfixes and better error handling

v2.0.0

• MIRACUM-Pipe extended to tNGS (tested with Illumina TruSight Tumor 170 panel)
• gnomAD database updated to gnomAD_genome v2.1.1
• UCSC SQL server is now used to annotate CNV regions per default
• Report extended and revised to include links to genome nexus and The Variant Interpretation for Cancer Consortium Meta-Knowledgebase
• stability improvments
• various bugfixes

v1.2.0

Added the export of variants and copy number variants for subsequent import into cBioPortal.

v1.0.1

Adjustments to new OncoKB licensing.

v1.0.0

added the proxy example run command

v1.0.0-beta.0

• major refactor
  • code simplification
  • parallel computation
  • configuration via yaml file
  • easy to use shell interface
• small bugfixes
• Dockerfile