v4.0.1

Minor stability improvements

v4.0.0

Version 4.0.0 of the MIRACUM-Pipe including WES and tNGS. The TSO500 workflow covers the DNA and RNA parts of the panel.

v4.0.0_beta

Merge pull request #75 from nr23730/fixGenomeRefBuild

fix genome refBuild

v3.0.0

Integration of a tumorOnly Pipeline;
Bugfixes in tNGS pipeline.

v2.0.1

minor bugfix: error about missing R packages.
R version updated to 4.0.1 to avoid those errors.

v2.0.0

• MIRACUM-Pipe extended to tNGS (tested with Illumina TruSight Tumor 170 panel)
• gnomAD database updated to gnomAD_genome v2.1.1
• UCSC SQL server is now used to annotate CNV regions per default
• Report extended and revised to include links to genome nexus and The Variant Interpretation for Cancer Consortium Meta-Knowledgebase
• stability improvments
• various bugfixes

v1.2.0

Added the export of variants and copy number variants for subsequent import into cBioPortal.

v1.1.0

Include maf file exporter for later import into cBioPortal.

v1.0.1

Minor bugfixes.

v1.0.0

small change in default.yaml