Skip to content

Commit

Permalink
version 1.0
Browse files Browse the repository at this point in the history
  • Loading branch information
KuzmaKhrabrov committed May 2, 2024
1 parent 942a717 commit 0a1f766
Show file tree
Hide file tree
Showing 4 changed files with 2,052 additions and 2,052 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -44,10 +44,10 @@ Links to energy databases including different train and test subsets are in file
Links to tarballs: [wave functions](./nablaDFT/links/nablaDFT_psi4wfn_links.txt)

#### Summary file
The csv file with conformations index, SMILES, atomic DFT properties and wfn archive names: [summary.csv](https://n-usr-31b1j.s3pd02.sbercloud.ru/b-usr-31b1j-qz9/data/nablaDFT/summary.csv)
The csv file with conformations index, SMILES, atomic DFT properties and wfn archive names: [summary.csv](https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/summary.csv)

#### Conformations files
Tar archive with xyz files [archive](https://n-usr-31b1j.s3pd02.sbercloud.ru/b-usr-31b1j-qz9/data/nablaDFT/conformations_archive.tar)
Tar archive with xyz files [archive](https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/conformations_archive.tar)

### Accessing elements of the dataset
#### Hamiltonian database
Expand Down
20 changes: 10 additions & 10 deletions nablaDFT/links/energy_databases.json
Original file line number Diff line number Diff line change
@@ -1,16 +1,16 @@
{
"train_databases": {
"dataset_train_100k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/train_100k_energy.db",
"dataset_train_10k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/train_10k_energy.db",
"dataset_train_5k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/train_5k_energy.db",
"dataset_train_2k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/train_2k_energy.db"
"dataset_train_100k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/train_100k_energy.db",
"dataset_train_10k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/train_10k_energy.db",
"dataset_train_5k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/train_5k_energy.db",
"dataset_train_2k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/train_2k_energy.db"
},
"test_databases": {
"dataset_test_structures": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/test_random.db",
"dataset_test_scaffolds": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/test_scaffolds.db",
"dataset_test_conformations_100k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/test_100k_conformers.db",
"dataset_test_conformations_10k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/test_10k_conformers.db.db",
"dataset_test_conformations_5k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/test_5k_conformers.db",
"dataset_test_conformations_2k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/energy_dbs/test_2k_conformers.db"
"dataset_test_structures": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/test_random.db",
"dataset_test_scaffolds": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/test_scaffolds.db",
"dataset_test_conformations_100k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/test_100k_conformers.db",
"dataset_test_conformations_10k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/test_10k_conformers.db.db",
"dataset_test_conformations_5k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/test_5k_conformers.db",
"dataset_test_conformations_2k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/energy_databases/test_2k_conformers.db"
}
}
40 changes: 20 additions & 20 deletions nablaDFT/links/models_checkpoints.json
Original file line number Diff line number Diff line change
@@ -1,33 +1,33 @@
{
"SchNet": {
"train_100k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnet/model_100k_split.pt",
"train_10k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnet/model_10k_split.pt",
"train_5k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnet/model_5k_split.pt",
"train_2k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnet/model_2k_split.pt"
"train_100k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnet/model_100k_split.pt",
"train_10k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnet/model_10k_split.pt",
"train_5k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnet/model_5k_split.pt",
"train_2k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnet/model_2k_split.pt"
},
"DimeNet": {
"train_100k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/dimenet/train_100k.zip",
"train_10k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/dimenet/train_10k.zip",
"train_5k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/dimenet/train_5k.zip",
"train_2k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/dimenet/train_2k.zip"
"train_100k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/dimenet/train_100k.zip",
"train_10k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/dimenet/train_10k.zip",
"train_5k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/dimenet/train_5k.zip",
"train_2k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/dimenet/train_2k.zip"
},
"PhiSNet": {
"train_100k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/phisnet/model_100k_split.pt",
"train_10k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/phisnet/model_10k_split.pt",
"train_5k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/phisnet/model_5k_split.pt",
"train_2k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/phisnet/model_2k_split.pt"
"train_100k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/phisnet/model_100k_split.pt",
"train_10k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/phisnet/model_10k_split.pt",
"train_5k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/phisnet/model_5k_split.pt",
"train_2k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/phisnet/model_2k_split.pt"
},
"PaiNN": {
"train_100k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/painn/model_100k_split.pt",
"train_10k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/painn/model_10k_split.pt",
"train_5k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/painn/model_5k_split.pt",
"train_2k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/painn/model_2k_split.pt"
"train_100k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/painn/model_100k_split.pt",
"train_10k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/painn/model_10k_split.pt",
"train_5k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/painn/model_5k_split.pt",
"train_2k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/painn/model_2k_split.pt"

},
"SchNOrb": {
"train_100k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnorb/model_100k_split.pt",
"train_10k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnorb/model_10k_split.pt",
"train_5k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnorb/model_5k_split.pt",
"train_2k": "https://n-usr-31b1j.s3pd12.sbercloud.ru/b-usr-31b1j-qz9/data/models_checkpoints/schnorb/model_2k_split.pt"
"train_100k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnorb/model_100k_split.pt",
"train_10k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnorb/model_10k_split.pt",
"train_5k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnorb/model_5k_split.pt",
"train_2k": "https://a002dlils-kadurin-nabladft.obs.ru-moscow-1.hc.sbercloud.ru/data/nablaDFT/models_checkpoints/schnorb/model_2k_split.pt"
}
}
Loading

0 comments on commit 0a1f766

Please sign in to comment.