FIX: Add even more updated schedule with new links

ARM-Development · May 21, 2024 · 6ab58f6 · 6ab58f6
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diff --git a/README.md b/README.md
@@ -3,8 +3,8 @@
 ***ARM Summer School 2024: Open Science in the Department of Energy's Atmospheric Radiation Measurement (ARM) User Facility: Connecting State-of-the-Art Models with Diverse Field Campaign Observations***
 
 
-[![badge](https://img.shields.io/static/v1.svg?logo=Jupyter&label=ARM+JupyterHub&message=ACE+Environment&color=blue)](https://jupyterhub.arm.gov/hub/user-redirect/git-pull?repo=https%3A//github.com/ARM-Development/arm-ams-short-course-2024&urlpath=lab/tree/arm-ams-short-course-2024/notebooks&branch=main)
-[![nightly-build](https://github.com/ARM-Development/arm-ams-short-course-2024/actions/workflows/nightly-build.yaml/badge.svg)](https://github.com/ARM-Development/arm-ams-short-course-2024/actions/workflows/nightly-build.yaml)
+[![badge](https://img.shields.io/static/v1.svg?logo=Jupyter&label=ARM+JupyterHub&message=ACE+Environment&color=blue)](https://jupyterhub.arm.gov/hub/user-redirect/git-pull?repo=https%3A//github.com/ARM-Development/arm-summer-school-2024&urlpath=lab/tree/arm-summer-school-2024/notebooks&branch=main)
+[![nightly-build](https://github.com/ARM-Development/arm-summer-school-2024/actions/workflows/nightly-build.yaml/badge.svg)](https://github.com/ARM-Development/arm-summer-school-2024/actions/workflows/nightly-build.yaml)
 
 ## Motivation
 
@@ -27,7 +27,7 @@ ARM Summer School 2024 Instructors
 ### Contributors
 
 <a href="https://github.com/ProjectPythia/cookbook-template/graphs/contributors">
-  <img src="https://contrib.rocks/image?repo=ARM-Development/arm-ams-short-course-2024" />
+  <img src="https://contrib.rocks/image?repo=ARM-Development/arm-summer-school-2024" />
 </a>
 
 ## Structure

diff --git a/_toc.yml b/_toc.yml
@@ -36,4 +36,5 @@ parts:
         - file: tutorials/comble/comble-mip-tutorial
         - file: tutorials/emc2/InstrumentSimulatorsForModelEvaluation.ipynb
         - file: tutorials/microhh/analyze_microhh
-        - file: tutorials/machine_learning/ARM_DQO_Spike_Detection
+        - file: tutorials/machine_learning/ARM_DQO_Spike_Detection
+        - file: tutorials/pyart/sail_qpe_grid
diff --git a/images/github-token.png b/images/github-token.png
diff --git a/preliminary/checklist/git.md b/preliminary/checklist/git.md
@@ -73,10 +73,10 @@ However, a better, more secure practice is to use a GitHub Personal Access Token
 more customizable permissions and can be revoked without affecting your main GitHub user
 account password.
 
-Take a moment to work through the instructions on the [GitHub personal access tokens](https://docs.github.com/en/github/authenticating-to-github/keeping-your-account-and-data-secure/creating-a-personal-access-token) page. For this hackweek, you need to check the **repo**, **admin:org**, and **workflow** scope.
+Take a moment to work through the instructions on the [GitHub personal access tokens](https://docs.github.com/en/github/authenticating-to-github/keeping-your-account-and-data-secure/creating-a-personal-access-token) page. Make sure you select the "classic" option. **Do not use the fine-grained personal access token option.
 
 Screenshot from github.com setting up the token:
-![github-token](../../img/github-token.png)
+![github-token](../../images/github-token.png)
 
 Once you have created your token, be sure to save it on your computer in case
 you need to re-authenticate again. The token will give you access to your
@@ -111,7 +111,7 @@ of your mouse is accessible on the JupyterHub by using the 'Shift' key.
 ```
 
 ```shell
-Cloning into 'github_setup_check'...
+Cloning into 'check_github_setup'...
 Username for 'https://github.com': <GitHub Username>
 Password for 'https://attendee@github.com':
 remote: Enumerating objects: 3, done.

diff --git a/preliminary/checklist_index.md b/preliminary/checklist_index.md
@@ -58,7 +58,7 @@ If this is your first time accessing the ARM Jupyterhub, then please follow the
 When filling out the form, be sure to complete the entries as follows:
 
 * **Visitor Role**: *Collaborator*
-* **Resources**: *ARM Data Center Enhanced Jupyterhub Access*
+* **Resources**: *ARM ADC JupyterHub Workshop*
 * **Justification**: *Participation in the ARM Summer School*
 * **Start Date**: May 19
 * **End Date**: May 24

diff --git a/schedule.md b/schedule.md
@@ -12,10 +12,10 @@
 | :---:                |    :----:                              |    :---:                           |
 | 08:30 AM - 09:30 AM  | [Intro to ARM + Welcome](https://docs.google.com/presentation/d/1X1lc7fCF4jDaD_nUZ8l6X7-4O0ZR3eB7/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)                  | Sally McFarlane and Jim Mather     |
 | 09:30 AM - 10:00 AM  | Coffee Break                           |                                    |
-| 10:00 AM - 11:00 AM  | [Intro to ARM Data Workbench](https://docs.google.com/presentation/d/1v8d_Fd6gqKap2MyonIx9YeTSakY_pUAL/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)            | Sujata Goswami + Mike Giansiracusa |
+| 10:00 AM - 11:00 AM  | [Intro to ARM Data Workbench](https://docs.google.com/presentation/d/1iZYW8Ch-pC5R0qn1eDfTA6YCqK1qugX4/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)            | Sujata Goswami + Mike Giansiracusa |
 | 11:00 AM - 12:00 PM  | [Intro to ARM Open Source Software](https://docs.google.com/presentation/d/1e4IAEWNxw2ly8HTMcuz4fLhwpBNcrg2D/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)      | Scott Collis + Joe O'Brien         |
 | 12:00 PM - 01:00 PM  | Working Lunch: Elevator Pitch Intros   | Max Grover                         |
-| 01:00 PM - 01:45 PM  | [Intro to COMBLE-MIP](https://docs.google.com/presentation/d/1v1WGTEhguSBBQ_lAdj_9c85YpJwHDPqy/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)                    | Tim Juliano                        |
+| 01:00 PM - 01:45 PM  | [Intro to COMBLE-MIP](https://docs.google.com/presentation/d/1pXFU-2K4PDwpAY9vHqQ-3pIBn0uFg-8M/edit?usp=sharing&ouid=109458928369860454495&rtpof=true&sd=true)                    | Tim Juliano                        |
 | 01:45 PM - 02:30 PM  | [Intro to LASSO](https://docs.google.com/presentation/d/1I4coa4yfnGot2Z_ksSxk0jIIu8X-WrGK/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)                         | William Gustafson                  |
 | 02:30 PM - 03:00 PM  | Coffee Break                           |                                    |
 | 03:00 PM - 03:45 PM  | [Intro to SAIL and WRF Model Data](https://docs.google.com/presentation/d/1bnRNTT-cxB_tRSeWcEfbYGEbqqROMsve/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)       | Dan Feldman                        |
@@ -27,7 +27,8 @@
 | :---:                |    :----:                              |    :---:                           |
 | 08:30 AM - 09:30 AM  | [AI/Machine Learning for Data Quality](tutorials/machine_learning/ARM_DQO_Spike_Detection.ipynb)   | Mia Li   |
 | 09:30 AM - 10:00 AM  | Coffee Break                           |                                    |
-| 10:00 AM - 12:00 PM  | [Aerosol + Profiling Measurements in ARM](https://docs.google.com/presentation/d/1cqg9WOEoMFUHuW10ajIFyrtJ45Q2mg-k/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)| Damao Zhang + Bobby Jackson        |
+| 10:00 AM - 11:00 AM  | [Aerosol + Profiling Measurements in ARM](https://docs.google.com/presentation/d/1cqg9WOEoMFUHuW10ajIFyrtJ45Q2mg-k/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)| Damao Zhang + Bobby Jackson        |
+| 11:00 AM - 12:00 PM  | [Intro to ARM Radar Data Products](https://docs.google.com/presentation/d/1D-x3ze1N0UK7elKoqb98MYj3rPr4PXGT/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)       | Ya-Chien Feng and Joe O'Brien      |
 | 12:00 PM - 01:00 PM  | [Working Lunch: Intro to xwrf](tutorials/xarray/xwrf-xarray-intro)    | Max Grover                         |
 | 01:00 PM - 05:00 PM  | Break into Groups: Plot your Data!     |                                    |
 
@@ -47,8 +48,7 @@
 
 | Time                 | Topic                                  | Presenter(s)                       |
 | :---:                |    :----:                              |    :---:                           |
-| 08:30 AM - 09:30 AM  | [Intro to ARM Radar Data Products](https://docs.google.com/presentation/d/14O3OSaZadIvVmZPHa3f5cf52avmp_zxx/edit?usp=sharing&ouid=104304750518137712212&rtpof=true&sd=true)       | Ya-Chien Feng and Joe O'Brien      |
-| 09:30 AM - 10:00 AM  | Radar Data Retrievals                  | Joe O'Brien                        |
+| 08:30 AM - 10:00 AM  | Radar Data Retrievals                  | Joe O'Brien                        |
 | 10:00 AM - 10:30 AM  | Coffee Break                           |                                    |
 | 10:30 AM - 12:00 PM  | Office Hours: How is it going?         |                                    |
 | 12:00 PM - 01:00 PM  | Working Lunch: Installing Local Python | Max Grover                         |

diff --git a/tutorials/comble/comble-mip-tutorial.ipynb b/tutorials/comble/comble-mip-tutorial.ipynb
@@ -9,7 +9,9 @@
    "source": [
     "# COMBLE-MIP Tutorial\n",
     "\n",
-    "* Please direct any questions to Tim Juliano (NSF NCAR, tjuliano@ucar.edu); updated 5/16/24\n",
+    "* Please direct any questions to Tim Juliano (NSF NCAR, tjuliano@ucar.edu); updated 5/19/24\n",
+    "\n",
+    "    * Credit to Florian Tornow (Columbia/NASA GISS) and Ann Fridlind (NASA GISS) for develping much of this code <br/><br/>\n",
     "\n",
     "* The below notebook focuses on the DOE-funded Cold-Air Outbreaks in the Marine Boundary Layer Experiment (COMBLE) that took place from 2019-2020. More information about COMBLE can be found in Geerts et al. (2022). <br /><ins>Reference</ins><br />Geerts, B., et al., 2022: The COMBLE campaign: A study of marine boundary layer clouds in Arctic cold-air outbreaks, Bull. Amer. Meteor. Soc, 103, E1371–E1389. https://doi.org/10.1175/BAMS-D-21-0044.1\n",
     "\n",
@@ -1453,7 +1455,7 @@
    "source": [
     "In addition to the raw model outputs, we have post-processed the WRF and DHARMA outputs for use with EMC^2. Those files may be found at the following paths:\n",
     "* WRF: ```/data/project/ARM_Summer_School_2024_Data/comble-mip/output_les/wrf/WRF_Lx25_dx100_FixN_raw/emc2_prep*```\n",
-    "* DHARMA: ```/data/project/ARM_Summer_School_2024_Data/comble-mip/output_les/dharma/emc2/emc2_prep*``` \\\n",
+    "* DHARMA: ```/data/project/ARM_Summer_School_2024_Data/comble-mip/output_les/dharma/emc2/emc2_prep*```\n",
     "\n",
     "EMC^2-ready files from WRF are available hourly while the three DHARMA files *11521.tgz, *20296.tgz, and *29549.tgz are from 06, 12, and 18 UTC, respectively."
    ]

diff --git a/tutorials/index.md b/tutorials/index.md
@@ -16,3 +16,10 @@ time you log in.
 | [...and LASSO-ShCu part 2](./lasso/lasso-cacti_part2.ipynb)                                        |
 | [Introduction to LASSO-CACTI](./lasso/lasso-cacti.ipynb)                                           |
 | [...and LASSO-CACTI part 2](./lasso/lasso-cacti_part2.ipynb)                                       |
+| [Introduction to xwrf](./xarray/xwrf-xarray-intro.ipynb)                                           |
+| [COMBLE-MIP](./comble/comble-mip-tutorial.ipynb)                                                   |
+| [Harnessing Instrument Simulators for Model Evalution](./emc2/InstrumentSimulatorsForModelEvaluation.ipynb) |
+| [Analyze microhh LES data](./microhh/manalyze_microhh.ipynb)                                       |
+| [ARM DQ Office ML Spike Detection](./machine_learning/ARM_DQO_Spike_Detection.ipynb)               |
+| [Snowfall Retrievals from SAIL X-Band Radar](./pyart/sail_qpe_grid.ipynb)                          |
+
diff --git a/tutorials/machine_learning/ARM_DQO_Spike_Detection.ipynb b/tutorials/machine_learning/ARM_DQO_Spike_Detection.ipynb
@@ -227,7 +227,8 @@
    "source": [
     "da_normal = ds_normal[target_variable].values\n",
     "time_steps=1\n",
-    "diff_normal =  da_normal - np.roll(da_normal, shift = time_steps) # See Section 3 Feature Engineering"
+    "diff_normal =  da_normal - np.roll(da_normal, shift = time_steps) # See Section 5 Feature Engineering\n",
+    "diff_normal[:time_steps] = [0]*time_steps"
    ]
   },
   {