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@AWGL

All Wales Medical Genomics Service

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  1. variant_classification_DB variant_classification_DB Public archive

    A database for storing the classification of variants.

    Python 5

  2. auto_qc auto_qc Public

    Automatic NGS Pipeline Monitoring and Quality Control

    JavaScript 3 1

  3. DragenWGS DragenWGS Public

    A pipeline for analysing WGS data on the Dragen

    Shell 3 1

  4. resources resources Public

    Links to useful resources

    1

  5. NGS_Sample_Sheets NGS_Sample_Sheets Public

    Sample sheet generator to run samples on NGS machines

    Java 1

  6. SomaticEnrichment SomaticEnrichment Public

    NGS pipeline for the detection of somatic variation (SNVs & CNVs) and fusion genes

    Shell 1 1

Repositories

Showing 10 of 69 repositories
  • somatic_db Public

    A database for analysing cancer NGS data within AWMGS

    AWGL/somatic_db’s past year of commit activity
    Python 0 MIT 2 33 4 Updated Apr 4, 2025
  • auto_qc Public

    Automatic NGS Pipeline Monitoring and Quality Control

    AWGL/auto_qc’s past year of commit activity
    JavaScript 3 1 17 (1 issue needs help) 4 Updated Apr 2, 2025
  • SomaticAmplicon Public Forked from mcgml/SomaticAmplicon

    NGS pipeline for somatic variant calling from amplicon datasets

    AWGL/SomaticAmplicon’s past year of commit activity
    Shell 0 3 3 0 Updated Mar 31, 2025
  • DragenGE Public

    Pipeline for joint calling of samples from targeted enrichment assays.

    AWGL/DragenGE’s past year of commit activity
    Shell 1 0 1 1 Updated Mar 7, 2025
  • bad_code Public

    A repository of bad code for code review teaching

    AWGL/bad_code’s past year of commit activity
    Python 0 0 0 0 Updated Feb 18, 2025
  • TSO500_post_processing Public
    AWGL/TSO500_post_processing’s past year of commit activity
    Python 0 0 8 0 Updated Feb 5, 2025
  • IlluminaQC-WREN Public Forked from mbyvcm/IlluminaQC-WREN
    AWGL/IlluminaQC-WREN’s past year of commit activity
    Shell 0 1 3 0 Updated Jan 24, 2025
  • copy_tsca Public

    Copying files for TruSight Cancer workflow

    AWGL/copy_tsca’s past year of commit activity
    Python 0 0 0 0 Updated Nov 26, 2024
  • somalier_wrapper Public

    wrapper scripts for estimating relatedness between samples using the software Somalier

    AWGL/somalier_wrapper’s past year of commit activity
    0 0 0 1 Updated Oct 25, 2024
  • variant_classification_DB Public archive

    A database for storing the classification of variants.

    AWGL/variant_classification_DB’s past year of commit activity
    Python 5 0 10 0 Updated Sep 17, 2024
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