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@AbateLab

Abate Lab

A collection of bioinformatic tools developed by the Abate Lab at UC San Francisco.

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  1. Pump-Control-Program Pump-Control-Program Public

    Program for controlling New Era syringe pumps at drop stations

    Python 6 4

  2. Barcoding Barcoding Public

    Tools for evaluating quality of barcoding runs, filtering out low quality data, and counteracting PCR noise

    Python 5

  3. SiC-seq SiC-seq Public

    Scripts used in the 2017 SiC-seq paper

    Python 3 3

  4. ModularGelBeads ModularGelBeads Public

    Scripts corresponding to the manuscript "Modular barcode beads for microfluidic single cell genomics"

    Jupyter Notebook 2

  5. Mass_spec_image_UMAP Mass_spec_image_UMAP Public

    The scripts here are used to generate the UMAP clustering based on the data of mass spectrum imaging (MSI) by using R and MATLAB.

    MATLAB 2

  6. DAb-seq DAb-seq Public

    DAb-seq: combined single-cell DNA genotyping and protein quantification.

    Jupyter Notebook 1 3

Repositories

Showing 10 of 10 repositories
  • AbateLab/MissonBioTools’s past year of commit activity
    Python 0 0 0 0 Updated Jan 28, 2022
  • Mass_spec_image_UMAP Public

    The scripts here are used to generate the UMAP clustering based on the data of mass spectrum imaging (MSI) by using R and MATLAB.

    AbateLab/Mass_spec_image_UMAP’s past year of commit activity
    MATLAB 2 Apache-2.0 0 0 0 Updated Dec 28, 2021
  • DAb-seq Public

    DAb-seq: combined single-cell DNA genotyping and protein quantification.

    AbateLab/DAb-seq’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 3 1 0 Updated Mar 16, 2021
  • ModularGelBeads Public

    Scripts corresponding to the manuscript "Modular barcode beads for microfluidic single cell genomics"

    AbateLab/ModularGelBeads’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Aug 29, 2020
  • sorter-code Public

    Code for droplet sorting station.

    AbateLab/sorter-code’s past year of commit activity
    LabVIEW 0 3 0 0 Updated Jan 15, 2020
  • Pump-Control-Program Public

    Program for controlling New Era syringe pumps at drop stations

    AbateLab/Pump-Control-Program’s past year of commit activity
    Python 6 4 1 0 Updated May 17, 2018
  • SiC-seq Public

    Scripts used in the 2017 SiC-seq paper

    AbateLab/SiC-seq’s past year of commit activity
    Python 3 3 3 0 Updated Nov 9, 2017
  • Abseq Public

    Scripts used in the 2016 Abseq paper

    AbateLab/Abseq’s past year of commit activity
    Python 0 0 0 0 Updated Sep 12, 2016
  • SMDB-scripts Public

    Scripts used in SMDB-paper

    AbateLab/SMDB-scripts’s past year of commit activity
    Python 0 0 0 0 Updated Feb 15, 2016
  • Barcoding Public

    Tools for evaluating quality of barcoding runs, filtering out low quality data, and counteracting PCR noise

    AbateLab/Barcoding’s past year of commit activity
    Python 5 0 0 0 Updated Aug 5, 2015

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