This repository contains the data, code, and results for a comparative microbial network analysis aimed at uncovering the mode of action of antibiotic growth promoters (AGPs) and phytogenic feed additives (PFAs) using cecum metagenomic data to support reproducibility.
The raw count data and corresponding metadata are in 'data/raw'. The constructed microbial networks are in 'data/processed'.
Install: pip install -r requirements.txt
Run: python src/main.py