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Overflow protection #679

Closed
wants to merge 216 commits into from
Closed

Overflow protection #679

wants to merge 216 commits into from

Commits on Feb 7, 2023

  1. recode mazs in maz-to-maz table

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  2. basic implementation of parquet pipeline

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  3. fix overrun caused by dtype optimization

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  4. pipeline is a real class

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  5. Merge branch 'pipeline-parquet' into generic-whale 

    # Conflicts:
#	activitysim/core/pipeline.py
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Commits on Feb 9, 2023

  1. whales

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Commits on Feb 10, 2023

  1. refactoring

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  2. refactoring [ci-skip]

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  3. refactoring [skip ci]

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Commits on Feb 12, 2023

  1. refactoring

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Commits on Feb 13, 2023

  1. refactoring

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  2. refactor

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  3. refactoring

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  4. refactoring

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  5. refactoring

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  6. refactoring

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Commits on Feb 14, 2023

  1. refactoring

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  2. refactoring

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  3. refactor

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  4. refactoring

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  5. single process mtc ok

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Commits on Feb 15, 2023

  1. clean logging

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  2. refactor MP

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  3. refactor-mp

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Commits on Feb 17, 2023

  1. core.tests

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  2. fix mtc

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  3. style

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  4. test cli

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  5. bump python to 3.10

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Commits on Feb 18, 2023

  1. 3.10 as str

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  2. test summarize

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Commits on Feb 19, 2023

  1. clean up checkpointing

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  2. clean checkpoints

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  3. various tests

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  4. fix vts

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  5. optimize imports

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  6. optimize imports

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  7. fix is_open and is_readonly

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Commits on Feb 20, 2023

  1. refactoring

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  2. estimation only when settings exist

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  3. fix circular import

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  4. test_mtc_progressive

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  5. mtc progressive test

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  6. persist sharrow cache

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  7. asim create always makes a subdir

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  8. cleaning out inject

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Commits on Feb 21, 2023

  1. testing xborder

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  2. run_if_exists

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  3. cleanup

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  4. refactor

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  5. refactoring

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  6. fix persons_merged

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Commits on Feb 22, 2023

  1. refactor

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  2. refactor

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  3. refactor

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  4. refactor

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  5. external examples

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  6. refactor

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  7. refactor

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  8. eval_str on annotations

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  9. GA external regional models

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  10. actions/cache@v3

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  11. clean

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  12. state prep

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  13. whale to state

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Commits on Feb 23, 2023

  1. fixes

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  2. fixes

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  3. fix annotations as str

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Commits on Feb 24, 2023

  1. zarr fix

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  2. xborder fix

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  3. bugfix

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  4. fixes

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  5. extending

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  6. docstring

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Commits on Feb 27, 2023

  1. refactor

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  2. refactor

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  3. optional altair

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  4. viz clean

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  5. hist bounds

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Commits on Feb 28, 2023

  1. dataset accessor

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  2. steps use default args

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  3. duplicate_step_execution

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Commits on Mar 4, 2023

  1. trace validation

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  2. bugfixing

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  3. bugfixing

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  4. bugfixing

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  5. more error logging when external example fails

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Commits on Mar 5, 2023

  1. require appdirs

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  2. missing state

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  3. fix tests

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  4. cleanup

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  5. fix multizone

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Commits on Mar 6, 2023

  1. allow tar.gz trace validation

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Commits on Mar 7, 2023

  1. fix marin

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  2. test fixing

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  3. fix random seed

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  4. mtc_extended

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  5. mtc_ext

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  6. mtc_ext

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  7. mtc_ext

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  8. mtc_ext

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  9. don't require pytest for run

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  10. stray bracket

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  11. testing

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Commits on Mar 8, 2023

  1. fix xborder

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  2. ext pipeline

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  3. testing

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  4. better test

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  5. test parquet store

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  6. fix loading pickled tables in mp

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  7. doc

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  8. exercise pickling in store test

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  9. est updates

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  10. test est fix

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  11. cdap for est

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  12. fix t0 on error

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  13. allow aborted steps

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Commits on Mar 9, 2023

  1. repair sandag test

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  2. repaid sandag

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Commits on Mar 19, 2023

  1. reformat tables as requested

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  2. change in cdap est targets due to change in randomness

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  3. fix env

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Commits on Mar 20, 2023

  1. datastore

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  2. clean up

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  3. fix test

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Commits on Mar 21, 2023

  1. list checkpoint names

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  2. more

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  3. dependency changes

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  4. Merge commit '99476c5a2862810c5d8343a5deaec4b177906007' into roundhouse 

    # Conflicts:
#	activitysim/abm/models/cdap.py
#	activitysim/abm/models/trip_mode_choice.py
#	activitysim/abm/models/trip_scheduling.py
#	activitysim/abm/models/util/annotate.py
#	activitysim/abm/models/util/cdap.py
#	activitysim/abm/models/vehicle_type_choice.py
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Commits on Mar 22, 2023

  1. repair merge errors and inconsistencies

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  2. blacken

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  3. ignores

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  4. change index dtype to signed int for consistency

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  5. partial fix of external tests

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  6. ruff

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  7. rm datastore

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  8. state.run.all now handles mp

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  9. fix psrc example

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Commits on Mar 23, 2023

  1. trip scheduling logic_version

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  2. trip scheduling logic from ActivitySim#660

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  3. make skim_dataset known before getting it

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  4. allow missing skims

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  5. prevent inf recursion when checkpoint is None

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  6. update external link

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  7. fix outside auto own test

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Commits on Mar 24, 2023

  1. fix joint freq comp

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  2. upgrade testing

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Commits on Mar 28, 2023

  1. repair zone coding in test

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  2. ignore parquet

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  3. Merge commit 'fbec0a59f9ee9a0886d12b7845d3bed0f9a7f6e0' into generic-… 

    …whale

# Conflicts:
#	activitysim/abm/models/trip_scheduling.py
#	activitysim/core/config.py
#	docs/models.rst
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Commits on Mar 30, 2023

  1. validate assign on settings

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Commits on Mar 31, 2023

  1. allow parquet inputs

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Commits on Apr 1, 2023

  1. allow disable sharrow in WFH

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  2. zarr write time

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  3. nan on missing

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Commits on Apr 2, 2023

  1. start docs

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Commits on Apr 3, 2023

  1. memory optimizations

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  2. check_for_variability cannot be None

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Commits on Apr 4, 2023

  1. accessibility improvements

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Commits on Apr 7, 2023

  1. pinderella

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  2. pandas in setup.cfg deps

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  3. Merge commit 'd416f26af7d10e811933f357b8f8ebf5fbbcde05' into generic-… 

    …whale

# Conflicts:
#	activitysim/cli/create.py
#	conda-environments/activitysim-dev-base.yml
#	conda-environments/activitysim-dev.yml
#	conda-environments/github-actions-tests.yml
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  4. doc nullstore

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  5. external:prototype_psrc_in_development

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  6. some docs

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Commits on Apr 10, 2023

  1. doc updates [makedocs] 

    appdirs -> platformdirs
sphinx accessor autodoc
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  2. branch docs on 3.10

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  3. manual doc build [makedocs]

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Commits on Apr 11, 2023

  1. document download_external_example

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  2. repair cdap for joint

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  3. external examples doc [makedocs]

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Commits on Apr 12, 2023

  1. so much doc [makedocs]

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Commits on Apr 13, 2023

  1. checkpoints

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  2. checkpoint docs 

    [makedocs]
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Commits on Apr 15, 2023

  1. estimation example

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  2. Merge branch 'develop' into generic-whale 

    # Conflicts:
#	activitysim/cli/create.py
#	conda-environments/activitysim-dev-base.yml
#	conda-environments/github-actions-tests.yml
#	setup.cfg
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  3. ext test

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  4. require sharrow 2.6

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  5. add zstandard to envs

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  6. fix error in unpacking

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Commits on Apr 16, 2023

  1. update psrc ext link

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Commits on Apr 17, 2023

  1. allow maz_ceiling to be any kind of int

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  2. initialize_filesystem doc

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Commits on Apr 18, 2023

  1. doc updates [makedocs]

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  2. more docs

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  3. documentation [makedocs]

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Commits on Apr 24, 2023

  1. docs on decorators [makedocs]

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  2. cache env [makedocs]

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  3. various bug fixes

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Commits on Apr 25, 2023

  1. chunk_method is literal

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  2. interactive run docs [makedocs]

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  3. fix link

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  4. doc steps

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  5. class no init template

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  6. api on correct pages [makedocs]

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  7. fix bug in log file names 

    closes ActivitySim#668
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Commits on Apr 26, 2023

  1. fix error in MP resume_after 

    closes ActivitySim#669
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  2. doc duplicate_step_execution

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Commits on May 1, 2023

  1. fix link

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  2. docs

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Commits on May 2, 2023

  1. cdap est coefficients

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  2. clean up workflows

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  3. cleaning

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Commits on May 3, 2023

  1. document free parking

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Commits on May 4, 2023

  1. source_file_paths

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  2. allow compute_columns to consume PydanticBase

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  3. bugfix

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  4. docs for nests [makedocs]

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  5. doc updates [makedocs]

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Commits on May 5, 2023

  1. yaml.dump paths to strings

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  2. logit configs in separate file [makedocs]

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Commits on May 17, 2023

  1. overflow protection in utils_to_probs

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  2. only enable overflow_protect when not allow_zero_probs

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  3. logsums w probs

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Commits on May 18, 2023

  1. tweaks in regression test due to overflow protection

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Commits on May 19, 2023

  1. Merge branch 'develop' into overflow-protection

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