[WIP] Modernize package with a pyproject.toml

pyproject.toml

@@ -0,0 +1,76 @@
+# FB 2025-04-14: based on ADEL and hydroshoot, sphinx pkg in environment.yml
+[build-system]
+requires = [
+    "setuptools",
+    "six",
+  ]
+build-backend = "setuptools.build_meta"
+
+# allow openalea to be a namespace package
+[tool.setuptools.packages.find]
+where = ["src"]
+
+
+[project]
+name = "pycropml"
+dynamic = ["version", "readme"]
+authors = [
+  { name = "Cyrille Ahmed Midingoyi", email="cyrille_ahmed.midingoyi@cirad.fr" },
+]
+description = "A Python library to generate components from Crop2ML declarative language"
+license-files = ["LICEN[CS]E*"]
+requires-python = ">=3.8"
+classifiers = [
+  "Intended Audience :: Science/Research",
+  "Intended Audience :: Developers",
+  "Programming Language :: Python :: 3 :: Only",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
+  "Topic :: Scientific/Engineering",
+  "Framework :: OpenAlea",
+  "Framework :: Crop2ML",
+]
+
+dependencies = [
+    "ipykernel",
+    "configobj",
+    "six",
+    "setuptools",
+]
+
+[tool.setuptools.dynamic]
+version = {attr = "pycropml.version.__version__"}
+readme = {file = ["README.rst"]}
+
+# section specific to conda-only distributed package (not used by pip yet)
+[tool.conda.environment]
+channels = [
+  "openalea3",
+  "conda-forge"
+]
+dependencies = [
+]
+
+[project.optional-dependencies]
+test = ["pytest"]
+doc = [
+  "sphinx-favicon",
+  "sphinx-rtd-theme",
+  "pydata-sphinx-theme",
+  "myst-parser",
+  "nbsphinx",
+]
+
+[project.urls]
+Homepage = "https://github.com/AgriculturalModelExchangeInitiative/PyCrop2ML"
+"Bug Tracker" = "https://github.com/AgriculturalModelExchangeInitiative/PyCrop2ML/issues"
+Discussions = "https://github.com/AgriculturalModelExchangeInitiative/PyCrop2ML/discussions"
+Changelog = "https://github.com/AgriculturalModelExchangeInitiative/PyCrop2ML/releases"
+
+#[tool.setuptools.package-data]
+#"pycropml_data" = ["*"]
+
+[project.scripts]
+cyml = " pycropml.main:main"

requirements.txt

@@ -1,28 +1,5 @@
-# {# pkglts, pysetup
-# requirements are managed by pkglts, do not edit this file at all
-# edit .pkglts/pkg_cfg instead
-# section pysetup
-
-# install
-
-
-# run examples
-
-
-# test
-#pytest
-#pytest-mock
-
-
-# compile doc
-#sphinx
-
-
-# other dvlpt tools
-
-
-# #}
-path
+path.py
+#yaml
 six
 nbformat
 numpy==2.0.2
@@ -31,9 +8,9 @@ nbsphinx
 networkx
 graphviz
 pydot
-pyyaml
+#pyyaml
 unyt
 IPython
-antlr4-python3-runtime==4.8
+antlr4-python3-runtime==4.13.0
 xmlformatter
 pandas==2.2.3

src/pycropml/transpiler/antlr_py/grammars/CMake.interp

@@ -34,4 +34,4 @@ compound_argument
 
 
 atn:
-[3, 24715, 42794, 33075, 47597, 16764, 15335, 30598, 22884, 3, 13, 42, 4, 2, 9, 2, 4, 3, 9, 3, 4, 4, 9, 4, 4, 5, 9, 5, 3, 2, 7, 2, 12, 10, 2, 12, 2, 14, 2, 15, 11, 2, 3, 2, 3, 2, 3, 3, 3, 3, 3, 3, 3, 3, 7, 3, 23, 10, 3, 12, 3, 14, 3, 26, 11, 3, 3, 3, 3, 3, 3, 4, 3, 4, 3, 5, 3, 5, 3, 5, 7, 5, 35, 10, 5, 12, 5, 14, 5, 38, 11, 5, 3, 5, 3, 5, 3, 5, 2, 2, 6, 2, 4, 6, 8, 2, 3, 4, 2, 5, 6, 8, 9, 2, 42, 2, 13, 3, 2, 2, 2, 4, 18, 3, 2, 2, 2, 6, 29, 3, 2, 2, 2, 8, 31, 3, 2, 2, 2, 10, 12, 5, 4, 3, 2, 11, 10, 3, 2, 2, 2, 12, 15, 3, 2, 2, 2, 13, 11, 3, 2, 2, 2, 13, 14, 3, 2, 2, 2, 14, 16, 3, 2, 2, 2, 15, 13, 3, 2, 2, 2, 16, 17, 7, 2, 2, 3, 17, 3, 3, 2, 2, 2, 18, 19, 7, 5, 2, 2, 19, 24, 7, 3, 2, 2, 20, 23, 5, 6, 4, 2, 21, 23, 5, 8, 5, 2, 22, 20, 3, 2, 2, 2, 22, 21, 3, 2, 2, 2, 23, 26, 3, 2, 2, 2, 24, 22, 3, 2, 2, 2, 24, 25, 3, 2, 2, 2, 25, 27, 3, 2, 2, 2, 26, 24, 3, 2, 2, 2, 27, 28, 7, 4, 2, 2, 28, 5, 3, 2, 2, 2, 29, 30, 9, 2, 2, 2, 30, 7, 3, 2, 2, 2, 31, 36, 7, 3, 2, 2, 32, 35, 5, 6, 4, 2, 33, 35, 5, 8, 5, 2, 34, 32, 3, 2, 2, 2, 34, 33, 3, 2, 2, 2, 35, 38, 3, 2, 2, 2, 36, 34, 3, 2, 2, 2, 36, 37, 3, 2, 2, 2, 37, 39, 3, 2, 2, 2, 38, 36, 3, 2, 2, 2, 39, 40, 7, 4, 2, 2, 40, 9, 3, 2, 2, 2, 7, 13, 22, 24, 34, 36]
+[4, 1, 11, 40, 2, 0, 7, 0, 2, 1, 7, 1, 2, 2, 7, 2, 2, 3, 7, 3, 1, 0, 5, 0, 10, 8, 0, 10, 0, 12, 0, 13, 9, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 5, 1, 21, 8, 1, 10, 1, 12, 1, 24, 9, 1, 1, 1, 1, 1, 1, 2, 1, 2, 1, 3, 1, 3, 1, 3, 5, 3, 33, 8, 3, 10, 3, 12, 3, 36, 9, 3, 1, 3, 1, 3, 1, 3, 0, 0, 4, 0, 2, 4, 6, 0, 1, 2, 0, 3, 4, 6, 7, 40, 0, 11, 1, 0, 0, 0, 2, 16, 1, 0, 0, 0, 4, 27, 1, 0, 0, 0, 6, 29, 1, 0, 0, 0, 8, 10, 3, 2, 1, 0, 9, 8, 1, 0, 0, 0, 10, 13, 1, 0, 0, 0, 11, 9, 1, 0, 0, 0, 11, 12, 1, 0, 0, 0, 12, 14, 1, 0, 0, 0, 13, 11, 1, 0, 0, 0, 14, 15, 5, 0, 0, 1, 15, 1, 1, 0, 0, 0, 16, 17, 5, 3, 0, 0, 17, 22, 5, 1, 0, 0, 18, 21, 3, 4, 2, 0, 19, 21, 3, 6, 3, 0, 20, 18, 1, 0, 0, 0, 20, 19, 1, 0, 0, 0, 21, 24, 1, 0, 0, 0, 22, 20, 1, 0, 0, 0, 22, 23, 1, 0, 0, 0, 23, 25, 1, 0, 0, 0, 24, 22, 1, 0, 0, 0, 25, 26, 5, 2, 0, 0, 26, 3, 1, 0, 0, 0, 27, 28, 7, 0, 0, 0, 28, 5, 1, 0, 0, 0, 29, 34, 5, 1, 0, 0, 30, 33, 3, 4, 2, 0, 31, 33, 3, 6, 3, 0, 32, 30, 1, 0, 0, 0, 32, 31, 1, 0, 0, 0, 33, 36, 1, 0, 0, 0, 34, 32, 1, 0, 0, 0, 34, 35, 1, 0, 0, 0, 35, 37, 1, 0, 0, 0, 36, 34, 1, 0, 0, 0, 37, 38, 5, 2, 0, 0, 38, 7, 1, 0, 0, 0, 5, 11, 20, 22, 32, 34]