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Alepidoptera7/README.md

Hello Biological World!

I'm Quin Lamothe, a bioinformatic engineer.

I'm currently pursing a Masters of Engineering from UC Berkeley in Bioengineering - Bioinformatics and Computational Biology.

I hold bachelor's degrees in Biomolecular Engineering and Bioinformatics, and Computational Mathematics from UCSC.

Please, inspect my work such that we advance together!

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  1. 3D-Predictive-Cellular-Automata- 3D-Predictive-Cellular-Automata- Public

    Computational Mathematics Sr. Seminar project. Cellular automaton to predict tumor growth. Comparable to a 3-d Conway's Game of Life.

    Python 1

  2. k-means-to-BLAST- k-means-to-BLAST- Public

    Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

    Python

  3. assembly_scaffold_BLAST assembly_scaffold_BLAST Public

    Algorithm to parse, assemble and align genomic sequences by use machine learning techniques. The resulting sequences are used to form NCBI-BLAST respects and return sequence homologs.

    Python

  4. MissingMotif MissingMotif Public

    Determines the most probable sequences missing from a greater set of genomic reads.

    Python

  5. global_alignment_prediction global_alignment_prediction Public

    Machine learning methods for global alignment prediction by use of fourmer frequiencies and path traversal techniques.

    Python

  6. ssDNA-Aptamer-Prediction- ssDNA-Aptamer-Prediction- Public

    BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

    Python 1