added EMGInsertion

src/aind_data_schema/components/devices.py

@@ -253,6 +253,13 @@ class LickSensorType(str, Enum):
     PIEZOELECTIC = "Piezoelectric"
 
 
+class MyomatrixArrayType(str, Enum):
+    """Type of Myomatrix array"""
+
+    INJECTED = "Injected"
+    SUTURED = "Sutured"
+
+
 class Device(AindModel):
     """Generic device"""
 
@@ -921,4 +928,11 @@ class Scanner(Device):
     magnetic_strength_unit: str = Field(default="T", title="Magnetic strength unit")
 
 
+class MyomatrixArray(Device):
+    """Description of a Myomatrix array"""
+
+    device_type: Literal["Myomatrix Array"] = "Myomatrix Array"
+    array_type: MyomatrixArrayType = Field(..., title="Array type")
+
+
 LIGHT_SOURCES = Annotated[Union[Laser, LightEmittingDiode, Lamp], Field(discriminator="device_type")]

src/aind_data_schema/core/procedures.py

@@ -5,6 +5,7 @@
 from enum import Enum
 from typing import List, Literal, Optional, Set, Union
 
+from aind_data_schema_models.mouse_anatomy import MouseAnatomicalStructure
 from aind_data_schema_models.pid_names import PIDName
 from aind_data_schema_models.species import Species
 from aind_data_schema_models.specimen_procedure_types import SpecimenProcedureType
@@ -24,7 +25,7 @@
 from typing_extensions import Annotated
 
 from aind_data_schema.base import AindCoreModel, AindModel, AwareDatetimeWithDefault
-from aind_data_schema.components.devices import FiberProbe
+from aind_data_schema.components.devices import FiberProbe, MyomatrixArray
 from aind_data_schema.components.reagent import Reagent
 
 
@@ -555,6 +556,33 @@ class WaterRestriction(AindModel):
     end_date: Optional[date] = Field(default=None, title="Water restriction end date")
 
 
+class MyomatrixContact(AindModel):
+    """ "Description of a contact on a myomatrix thread"""
+
+    body_part: MouseAnatomicalStructure.BODY_PARTS = Field(..., title="Body part of contact insertion")
+    muscle: MouseAnatomicalStructure.EMG_MUSCLES = Field(..., title="Muscle of contact insertion")
+    in_muscle: bool = Field(..., title="In muscle")
+    notes: Optional[str] = Field(default=None, title="Notes")
+
+
+class MyomatrixThread(AindModel):
+    """Description of a thread of a myomatrix array"""
+
+    ground_electrode_location: MouseAnatomicalStructure.BODY_PARTS = Field(
+        ..., title="Location of ground electrode"
+    )
+    contacts: List[MyomatrixContact] = Field(..., title="Contacts")
+
+
+class MyomatrixInsertion(AindModel):
+    """Description of a Myomatrix array insertion for EMG"""
+
+    procedure_type: Literal["Myomatrix_Insertion"] = "Myomatrix_Insertion"
+    protocol_id: str = Field(..., title="Protocol ID", description="DOI for protocols.io")
+    myomatrix_array: MyomatrixArray = Field(..., title="Myomatrix array")
+    threads: List[MyomatrixThread] = Field(..., title="Array threads")
+
+
 class Perfusion(AindModel):
     """Description of a perfusion procedure that creates a specimen"""
 
@@ -603,6 +631,7 @@ class Surgery(AindModel):
                 IntraCisternalMagnaInjection,
                 IntraperitonealInjection,
                 IontophoresisInjection,
+                MyomatrixInsertion,
                 NanojectInjection,
                 OtherSubjectProcedure,
                 Perfusion,