added package req #4
Workflow file for this run
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| name: Generate artifact DAG | |
| on: [push] | |
| jobs: | |
| generate_dag_artifact: | |
| name: Generate DAG workflow image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: micromamba_env.yml | |
| cache-environment: true | |
| post-cleanup: 'none' | |
| - name: Install pip dependencies | |
| run: | | |
| micromamba run -n protein-runway pip install -r requirements.txt | |
| - name: Generate workflow image artifact | |
| run: | | |
| micromamba run -n protein-runway snakemake --dag 03_output/5vde_example.segmentation.tsv | dot -Tsvg > dag.svg | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: dependency-graph | |
| path: dag.svg | |