update pre-commit to fix tests

.github/workflows/ci.yml

@@ -25,13 +25,13 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@v5
       with:
         # setuptools_scm requires a non-shallow clone of the repository
         fetch-depth: 0
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
 
@@ -52,10 +52,10 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@v5
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: "3.11"
 

.github/workflows/pypi.yml

@@ -14,15 +14,15 @@ jobs:
       id-token: write
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v5
       with:
           # setuptools_scm requires a non-shallow clone of the repository
           fetch-depth: 0
 
-    - uses: actions/setup-python@v5
+    - uses: actions/setup-python@v6
       name: Install Python
 
     - name: Build SDist
       run: pipx run build --sdist
 
-    - uses: pypa/gh-action-pypi-publish@v1.12.4
+    - uses: pypa/gh-action-pypi-publish@v1.13.0

rubix/cosmology/base.py

@@ -56,8 +56,8 @@ def __init__(self, Om0: float, w0: float, wa: float, h: float):
         self.wa = jnp.float32(wa)
         self.h = jnp.float32(h)
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def scale_factor_to_redshift(
         self, a: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -79,33 +79,33 @@ def scale_factor_to_redshift(
         z = 1.0 / a - 1.0
         return z
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def _rho_de_z(self, z: Union[Float[Array, "..."], float]) -> Float[Array, "..."]:
         a = 1.0 / (1.0 + z)
         de_z = a ** (-3.0 * (1.0 + self.w0 + self.wa)) * lax.exp(
             -3.0 * self.wa * (1.0 - a)
         )
         return de_z
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def _Ez(self, z: Union[Float[Array, "..."], float]) -> Float[Array, "..."]:
         zp1 = 1.0 + z
         Ode0 = 1.0 - self.Om0
         t = self.Om0 * zp1**3 + Ode0 * self._rho_de_z(z)
         E = jnp.sqrt(t)
         return E
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def _integrand_oneOverEz(
         self, z: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
         return 1 / self._Ez(z)
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def comoving_distance_to_z(
         self, redshift: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -128,8 +128,8 @@ def comoving_distance_to_z(
         integrand = self._integrand_oneOverEz(z_table)
         return trapz(z_table, integrand) * C_SPEED * 1e-5 / self.h
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def luminosity_distance_to_z(
         self, redshift: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -150,8 +150,8 @@ def luminosity_distance_to_z(
         """
         return self.comoving_distance_to_z(redshift) * (1 + redshift)
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def angular_diameter_distance_to_z(
         self, redshift: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -172,8 +172,8 @@ def angular_diameter_distance_to_z(
         """
         return self.comoving_distance_to_z(redshift) / (1 + redshift)
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def distance_modulus_to_z(
         self, redshift: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -196,15 +196,15 @@ def distance_modulus_to_z(
         mu = 5.0 * jnp.log10(d_lum * 1e5)
         return mu
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def _hubble_time(self, z: Union[Float[Array, "..."], float]) -> Float[Array, "..."]:
         E0 = self._Ez(z)
         htime = 1e-16 * MPC / YEAR / self.h / E0
         return htime
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def lookback_to_z(
         self, redshift: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -229,8 +229,8 @@ def lookback_to_z(
         th = self._hubble_time(0.0)
         return th * res
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def age_at_z0(self) -> Float[Array, "..."]:
         """
         The function calculates the age of the universe at redshift 0.
@@ -250,17 +250,17 @@ def age_at_z0(self) -> Float[Array, "..."]:
         th = self._hubble_time(0.0)
         return th * res
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def _age_at_z_kern(
         self, redshift: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
         t0 = self.age_at_z0()
         tlook = self.lookback_to_z(redshift)
         return t0 - tlook
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def age_at_z(
         self, redshift: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -285,8 +285,8 @@ def age_at_z(
     def _age_at_z_vmap(self):
         return jit(vmap(self._age_at_z_kern))
 
-    @jaxtyped(typechecker=typechecker)
     @jit
+    @jaxtyped(typechecker=typechecker)
     def angular_scale(
         self, z: Union[Float[Array, "..."], float]
     ) -> Float[Array, "..."]:
@@ -327,9 +327,6 @@ def _Om_at_z(self, z):
         E = self._Ez(z)
         return self.Om0 * (1.0 + z) ** 3 / E / E
 
-
-
-
     @jit
     def _delta_vir(self, z):
         x = self._Om(z) - 1.0

rubix/cosmology/utils.py

@@ -8,8 +8,8 @@
 
 
 # Source: https://github.com/ArgonneCPAC/dsps/blob/b81bac59e545e2d68ccf698faba078d87cfa2dd8/dsps/utils.py#L247C1-L256C1
-@jaxtyped(typechecker=typechecker)
 @jit
+@jaxtyped(typechecker=typechecker)
 def _cumtrapz_scan_func(carryover, el):
     """
     Integral helper function, which uses the formula for trapezoidal integration.
@@ -37,8 +37,8 @@ def _cumtrapz_scan_func(carryover, el):
 
 
 # Source: https://github.com/ArgonneCPAC/dsps/blob/b81bac59e545e2d68ccf698faba078d87cfa2dd8/dsps/utils.py#L278C1-L298C1
-@jaxtyped(typechecker=typechecker)
 @jit
+@jaxtyped(typechecker=typechecker)
 def trapz(
     xarr: Union[jnp.ndarray, Float[Array, "n"]],
     yarr: Union[jnp.ndarray, Float[Array, "n"]],