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Releases: B-UMMI/ReMatCh

v.4.1.0

20 Aug 15:34
@cimendes cimendes
4.1.0
c2d6252
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v.4.1.0 Latest
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Moved ReMatCh from python 2 to python 3, with lots of bug-fixes and small improvements.
MLST mode with extended reference available for: Campylobacter jejuni, Escherichia coli, Haemophilus influenzae, Listeria monocytogenes, Salmonella enterica, Staphylococcus aureus, Streptococcus agalactiae, Streptococcus dysgalactiae, Streptococcus pneumoniae and Streptococcus pyogenes

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v3.3

10 Sep 11:47
@miguelpmachado miguelpmachado
v3.3
660a37c
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v3.3
  • Specify python2 as default Python
  • Allow reads download from SRA database (using SRA toolkit)
  • Include curl as alternative to wget to download reads
  • Produce extra report only containing information for sequences present
  • Minor bug fixes
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v3.2

16 Aug 15:42
@miguelpmachado miguelpmachado
v3.2
226b7ce
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v3.2 
v3.2
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v3.0

16 Aug 15:39
@miguelpmachado miguelpmachado
v3.0
385a6a7
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v3.0 
Do not run second time if no sequences left
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v2.0

10 Jan 13:40
@miguelpmachado miguelpmachado
v2.0
cd5b560
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v2.0 
Correct Bowtie2 command for SE
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