Merge pull request #17 from BDI-pathogens/refactoring #127

	name: Python 3.9 to 3.12

	on:
	push:
	branches: [ '**' ]
	pull_request:
	branches: [ main ]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.9", "3.10", "3.11", "3.12"]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8 mock mock_alchemy pytest
	pip install .

	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --max-complexity=10 --statistics

	- name: Test with pytest
	run: \|
	pytest

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