Merge pull request #18 from BDI-pathogens/refactoring #119
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| name: Coverage | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install coverage codecov mock mock_alchemy pytest | |
| pip install . | |
| - name: Run coverage | |
| run: | | |
| coverage run --source seq_dbutils -m pytest | |
| coverage report -m | |
| coverage xml | |
| - name: Run codecov | |
| if: success() | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| run: | | |
| codecov |