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config.log
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This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by FxTools configure 0.17, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure LDFLAGS=-L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ CPPFLAGS=-I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/
## --------- ##
## Platform. ##
## --------- ##
hostname = hk-login-38-4.hk.hpc
uname -m = x86_64
uname -r = 2.6.32-696.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Tue Mar 21 19:29:05 UTC 2017
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/bin
PATH: /ifshk4/BC_PUB/biosoft/newblc/01.Usr/bin
PATH: /ifshk7/BC_PAP/PROJECT/F13HPCAPKF0126_LEGvaoR/bin/RAD_NPGT/bin/
PATH: /opt/openmpi/bin
PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /sbin
PATH: /opt/bio/ncbi/bin
PATH: /opt/bio/mpiblast/bin
PATH: /opt/bio/EMBOSS/bin
PATH: /opt/bio/clustalw/bin
PATH: /opt/bio/tcoffee/bin
PATH: /opt/bio/hmmer/bin
PATH: /opt/bio/phylip/exe
PATH: /opt/bio/mrbayes
PATH: /opt/bio/fasta
PATH: /opt/bio/glimmer/bin
PATH: /opt/bio/glimmer/scripts
PATH: /opt/bio/gromacs/bin
PATH: /opt/bio/gmap/bin
PATH: /opt/bio/tigr/bin
PATH: /opt/bio/autodocksuite/bin
PATH: /opt/bio/wgs/bin
PATH: /opt/ganglia/bin
PATH: /opt/ganglia/sbin
PATH: /usr/java/latest/bin
PATH: /opt/pdsh/bin
PATH: /opt/rocks/bin
PATH: /opt/rocks/sbin
PATH: /opt/condor/bin
PATH: /opt/condor/sbin
PATH: /opt/gridengine/bin/linux-x64
PATH: /home/heweiming/bin
PATH: /ifshk7/BC_PAP/PROJECT/F13HPCAPKF0126_LEGvaoR/bin/RAD_NPGT/bin/
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2544: checking for a BSD-compatible install
configure:2612: result: /usr/bin/install -c
configure:2623: checking whether build environment is sane
configure:2673: result: yes
configure:2814: checking for a thread-safe mkdir -p
configure:2853: result: /bin/mkdir -p
configure:2866: checking for gawk
configure:2882: found /bin/gawk
configure:2893: result: gawk
configure:2904: checking whether make sets $(MAKE)
configure:2926: result: yes
configure:3014: checking for gawk
configure:3041: result: gawk
configure:3110: checking for g++
configure:3126: found /ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/bin/g++
configure:3137: result: g++
configure:3164: checking for C++ compiler version
configure:3173: g++ --version >&5
g++ (GCC) 6.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3184: $? = 0
configure:3173: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/libexec/gcc/x86_64-pc-linux-gnu/6.4.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ./configure --prefix=/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc --with-gmp=/ifshk4/BC_PUB/biosoft/newblc/01.Usr --with-mpc=/ifshk4/BC_PUB/biosoft/newblc/01.Usr --with-mpfr=/ifshk4/BC_PUB/biosoft/newblc/01.Usr -enable-checking=release -enable-languages=c,c++,fortran,go,objc,obj-c++,java -disable-multilib
Thread model: posix
gcc version 6.4.0 (GCC)
configure:3184: $? = 0
configure:3173: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:3184: $? = 1
configure:3173: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'; did you mean '--version'?
g++: fatal error: no input files
compilation terminated.
configure:3184: $? = 1
configure:3204: checking whether the C++ compiler works
configure:3226: g++ -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.cpp >&5
configure:3230: $? = 0
configure:3278: result: yes
configure:3281: checking for C++ compiler default output file name
configure:3283: result: a.out
configure:3289: checking for suffix of executables
configure:3296: g++ -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.cpp >&5
configure:3300: $? = 0
configure:3322: result:
configure:3344: checking whether we are cross compiling
configure:3352: g++ -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.cpp >&5
configure:3356: $? = 0
configure:3363: ./conftest
configure:3367: $? = 0
configure:3382: result: no
configure:3387: checking for suffix of object files
configure:3409: g++ -c -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp >&5
configure:3413: $? = 0
configure:3434: result: o
configure:3438: checking whether we are using the GNU C++ compiler
configure:3457: g++ -c -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp >&5
configure:3457: $? = 0
configure:3466: result: yes
configure:3475: checking whether g++ accepts -g
configure:3495: g++ -c -g -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp >&5
configure:3495: $? = 0
configure:3536: result: yes
configure:3570: checking for style of include used by make
configure:3598: result: GNU
configure:3623: checking dependency style of g++
configure:3733: result: gcc3
configure:3802: checking for gcc
configure:3818: found /ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/bin/gcc
configure:3829: result: gcc
configure:3860: checking for C compiler version
configure:3869: gcc --version >&5
gcc (GCC) 6.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3880: $? = 0
configure:3869: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/libexec/gcc/x86_64-pc-linux-gnu/6.4.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ./configure --prefix=/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc --with-gmp=/ifshk4/BC_PUB/biosoft/newblc/01.Usr --with-mpc=/ifshk4/BC_PUB/biosoft/newblc/01.Usr --with-mpfr=/ifshk4/BC_PUB/biosoft/newblc/01.Usr -enable-checking=release -enable-languages=c,c++,fortran,go,objc,obj-c++,java -disable-multilib
Thread model: posix
gcc version 6.4.0 (GCC)
configure:3880: $? = 0
configure:3869: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3880: $? = 1
configure:3869: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:3880: $? = 1
configure:3884: checking whether we are using the GNU C compiler
configure:3903: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:3903: $? = 0
configure:3912: result: yes
configure:3921: checking whether gcc accepts -g
configure:3941: gcc -c -g -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:3941: $? = 0
configure:3982: result: yes
configure:3999: checking for gcc option to accept ISO C89
configure:4062: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:4062: $? = 0
configure:4075: result: none needed
configure:4097: checking dependency style of gcc
configure:4207: result: gcc3
configure:4227: checking how to run the C preprocessor
configure:4258: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:4258: $? = 0
configure:4272: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:4272: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "FxTools"
| #define PACKAGE_TARNAME "fxtools"
| #define PACKAGE_VERSION "0.17"
| #define PACKAGE_STRING "FxTools 0.17"
| #define PACKAGE_BUGREPORT "hewm2008@qq.com"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.17"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4297: result: gcc -E
configure:4317: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:4317: $? = 0
configure:4331: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:4331: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "FxTools"
| #define PACKAGE_TARNAME "fxtools"
| #define PACKAGE_VERSION "0.17"
| #define PACKAGE_STRING "FxTools 0.17"
| #define PACKAGE_BUGREPORT "hewm2008@qq.com"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.17"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4359: checking whether ln -s works
configure:4363: result: yes
configure:4370: checking whether make sets $(MAKE)
configure:4392: result: yes
configure:4444: checking for ranlib
configure:4460: found /usr/bin/ranlib
configure:4471: result: ranlib
configure:4497: checking for main in -lz
configure:4516: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lz >&5
configure:4516: $? = 0
configure:4525: result: yes
configure:4538: checking for main in -lm
configure:4557: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lm -lz >&5
configure:4557: $? = 0
configure:4566: result: yes
configure:4579: checking for main in -lncurses
configure:4598: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lncurses -lm -lz >&5
configure:4598: $? = 0
configure:4607: result: yes
configure:4620: checking for main in -lpthread
configure:4639: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
configure:4639: $? = 0
configure:4648: result: yes
configure:4661: checking for main in -lboost_system
configure:4680: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
configure:4680: $? = 0
configure:4689: result: yes
configure:4703: checking for main in -lbz2
configure:4722: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
configure:4722: $? = 0
configure:4731: result: yes
configure:4742: checking for main in -llzma
configure:4761: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
configure:4761: $? = 0
configure:4770: result: yes
configure:4782: checking for main in -lhts
configure:4801: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:4801: $? = 0
configure:4810: result: yes
configure:4828: checking for grep that handles long lines and -e
configure:4886: result: /bin/grep
configure:4891: checking for egrep
configure:4953: result: /bin/grep -E
configure:4958: checking for ANSI C header files
configure:4978: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:4978: $? = 0
configure:5051: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5051: $? = 0
configure:5051: ./conftest
configure:5051: $? = 0
configure:5062: result: yes
configure:5075: checking for sys/types.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for sys/stat.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for stdlib.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for string.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for memory.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for strings.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for inttypes.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for stdint.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5075: checking for unistd.h
configure:5075: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5075: $? = 0
configure:5075: result: yes
configure:5089: checking zlib.h usability
configure:5089: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5089: $? = 0
configure:5089: result: yes
configure:5089: checking zlib.h presence
configure:5089: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5089: $? = 0
configure:5089: result: yes
configure:5089: checking for zlib.h
configure:5089: result: yes
configure:5103: checking ncurses.h usability
configure:5103: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5103: $? = 0
configure:5103: result: yes
configure:5103: checking ncurses.h presence
configure:5103: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5103: $? = 0
configure:5103: result: yes
configure:5103: checking for ncurses.h
configure:5103: result: yes
configure:5117: checking htslib/sam.h usability
configure:5117: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5117: $? = 0
configure:5117: result: yes
configure:5117: checking htslib/sam.h presence
configure:5117: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5117: $? = 0
configure:5117: result: yes
configure:5117: checking for htslib/sam.h
configure:5117: result: yes
configure:5131: checking htslib/kstring.h usability
configure:5131: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5131: $? = 0
configure:5131: result: yes
configure:5131: checking htslib/kstring.h presence
configure:5131: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5131: $? = 0
configure:5131: result: yes
configure:5131: checking for htslib/kstring.h
configure:5131: result: yes
configure:5156: checking how to run the C++ preprocessor
configure:5183: g++ -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp
configure:5183: $? = 0
configure:5197: g++ -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp
conftest.cpp:33:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:5197: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "FxTools"
| #define PACKAGE_TARNAME "fxtools"
| #define PACKAGE_VERSION "0.17"
| #define PACKAGE_STRING "FxTools 0.17"
| #define PACKAGE_BUGREPORT "hewm2008@qq.com"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.17"
| #define HAVE_LIBZ 1
| #define HAVE_LIBM 1
| #define HAVE_LIBNCURSES 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_LIBBOOST_SYSTEM 1
| #define HAVE_LIBBZ2 1
| #define HAVE_LIBLZMA 1
| #define HAVE_LIBHTS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_ZLIB_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_HTSLIB_SAM_H 1
| #define HAVE_HTSLIB_KSTRING_H 1
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5222: result: g++ -E
configure:5242: g++ -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp
configure:5242: $? = 0
configure:5256: g++ -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp
conftest.cpp:33:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:5256: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "FxTools"
| #define PACKAGE_TARNAME "fxtools"
| #define PACKAGE_VERSION "0.17"
| #define PACKAGE_STRING "FxTools 0.17"
| #define PACKAGE_BUGREPORT "hewm2008@qq.com"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.17"
| #define HAVE_LIBZ 1
| #define HAVE_LIBM 1
| #define HAVE_LIBNCURSES 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_LIBBOOST_SYSTEM 1
| #define HAVE_LIBBZ2 1
| #define HAVE_LIBLZMA 1
| #define HAVE_LIBHTS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_ZLIB_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_HTSLIB_SAM_H 1
| #define HAVE_HTSLIB_KSTRING_H 1
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5287: checking boost/thread/thread.hpp usability
configure:5287: g++ -c -g -O2 -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp >&5
configure:5287: $? = 0
configure:5287: result: yes
configure:5287: checking boost/thread/thread.hpp presence
configure:5287: g++ -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp
configure:5287: $? = 0
configure:5287: result: yes
configure:5287: checking for boost/thread/thread.hpp
configure:5287: result: yes
configure:5301: checking boost/bind.hpp usability
configure:5301: g++ -c -g -O2 -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp >&5
configure:5301: $? = 0
configure:5301: result: yes
configure:5301: checking boost/bind.hpp presence
configure:5301: g++ -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp
configure:5301: $? = 0
configure:5301: result: yes
configure:5301: checking for boost/bind.hpp
configure:5301: result: yes
configure:5315: checking boost/thread/mutex.hpp usability
configure:5315: g++ -c -g -O2 -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp >&5
configure:5315: $? = 0
configure:5315: result: yes
configure:5315: checking boost/thread/mutex.hpp presence
configure:5315: g++ -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.cpp
configure:5315: $? = 0
configure:5315: result: yes
configure:5315: checking for boost/thread/mutex.hpp
configure:5315: result: yes
configure:5337: checking assert.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking assert.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for assert.h
configure:5337: result: yes
configure:5337: checking ctype.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking ctype.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for ctype.h
configure:5337: result: yes
configure:5337: checking fcntl.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking fcntl.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for fcntl.h
configure:5337: result: yes
configure:5337: checking for inttypes.h
configure:5337: result: yes
configure:5337: checking math.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking math.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for math.h
configure:5337: result: yes
configure:5337: checking for ncurses.h
configure:5337: result: yes
configure:5337: checking pthread.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking pthread.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for pthread.h
configure:5337: result: yes
configure:5337: checking semaphore.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking semaphore.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for semaphore.h
configure:5337: result: yes
configure:5337: checking stdio.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking stdio.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for stdio.h
configure:5337: result: yes
configure:5337: checking for stdlib.h
configure:5337: result: yes
configure:5337: checking sys/mman.h usability
configure:5337: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking sys/mman.h presence
configure:5337: gcc -E -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c
configure:5337: $? = 0
configure:5337: result: yes
configure:5337: checking for sys/mman.h
configure:5337: result: yes
configure:5337: checking for sys/stat.h
configure:5337: result: yes
configure:5337: checking for sys/types.h
configure:5337: result: yes
configure:5337: checking for unistd.h
configure:5337: result: yes
configure:5353: checking for stdbool.h that conforms to C99
configure:5420: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5420: $? = 0
configure:5427: result: yes
configure:5429: checking for _Bool
configure:5429: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5429: $? = 0
configure:5429: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
conftest.c: In function 'main':
conftest.c:86:20: error: expected expression before ')' token
if (sizeof ((_Bool)))
^
configure:5429: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "FxTools"
| #define PACKAGE_TARNAME "fxtools"
| #define PACKAGE_VERSION "0.17"
| #define PACKAGE_STRING "FxTools 0.17"
| #define PACKAGE_BUGREPORT "hewm2008@qq.com"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.17"
| #define HAVE_LIBZ 1
| #define HAVE_LIBM 1
| #define HAVE_LIBNCURSES 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_LIBBOOST_SYSTEM 1
| #define HAVE_LIBBZ2 1
| #define HAVE_LIBLZMA 1
| #define HAVE_LIBHTS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_ZLIB_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_HTSLIB_SAM_H 1
| #define HAVE_HTSLIB_KSTRING_H 1
| #define HAVE_BOOST_THREAD_THREAD_HPP 1
| #define HAVE_BOOST_BIND_HPP 1
| #define HAVE_BOOST_THREAD_MUTEX_HPP 1
| #define HAVE_ASSERT_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_MATH_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_SEMAPHORE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_SYS_MMAN_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((_Bool)))
| return 0;
| ;
| return 0;
| }
configure:5429: result: yes
configure:5440: checking for inline
configure:5456: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5456: $? = 0
configure:5464: result: inline
configure:5482: checking for int32_t
configure:5482: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5482: $? = 0
configure:5482: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
conftest.c: In function 'main':
conftest.c:89:53: warning: integer overflow in expression [-Woverflow]
< (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))];
^
conftest.c:88:12: error: storage size of 'test_array' isn't constant
static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1)
^~~~~~~~~~
configure:5482: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "FxTools"
| #define PACKAGE_TARNAME "fxtools"
| #define PACKAGE_VERSION "0.17"
| #define PACKAGE_STRING "FxTools 0.17"
| #define PACKAGE_BUGREPORT "hewm2008@qq.com"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.17"
| #define HAVE_LIBZ 1
| #define HAVE_LIBM 1
| #define HAVE_LIBNCURSES 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_LIBBOOST_SYSTEM 1
| #define HAVE_LIBBZ2 1
| #define HAVE_LIBLZMA 1
| #define HAVE_LIBHTS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_ZLIB_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_HTSLIB_SAM_H 1
| #define HAVE_HTSLIB_KSTRING_H 1
| #define HAVE_BOOST_THREAD_THREAD_HPP 1
| #define HAVE_BOOST_BIND_HPP 1
| #define HAVE_BOOST_THREAD_MUTEX_HPP 1
| #define HAVE_ASSERT_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_MATH_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_SEMAPHORE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_SYS_MMAN_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE__BOOL 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| enum { N = 32 / 2 - 1 };
| int
| main ()
| {
| static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1)
| < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))];
| test_array [0] = 0;
| return test_array [0];
|
| ;
| return 0;
| }
configure:5482: result: yes
configure:5493: checking for size_t
configure:5493: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5493: $? = 0
configure:5493: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
conftest.c: In function 'main':
conftest.c:87:21: error: expected expression before ')' token
if (sizeof ((size_t)))
^
configure:5493: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "FxTools"
| #define PACKAGE_TARNAME "fxtools"
| #define PACKAGE_VERSION "0.17"
| #define PACKAGE_STRING "FxTools 0.17"
| #define PACKAGE_BUGREPORT "hewm2008@qq.com"
| #define PACKAGE_URL ""
| #define PACKAGE "BamDeal"
| #define VERSION "0.17"
| #define HAVE_LIBZ 1
| #define HAVE_LIBM 1
| #define HAVE_LIBNCURSES 1
| #define HAVE_LIBPTHREAD 1
| #define HAVE_LIBBOOST_SYSTEM 1
| #define HAVE_LIBBZ2 1
| #define HAVE_LIBLZMA 1
| #define HAVE_LIBHTS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_ZLIB_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_HTSLIB_SAM_H 1
| #define HAVE_HTSLIB_KSTRING_H 1
| #define HAVE_BOOST_THREAD_THREAD_HPP 1
| #define HAVE_BOOST_BIND_HPP 1
| #define HAVE_BOOST_THREAD_MUTEX_HPP 1
| #define HAVE_ASSERT_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_MATH_H 1
| #define HAVE_NCURSES_H 1
| #define HAVE_PTHREAD_H 1
| #define HAVE_SEMAPHORE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_SYS_MMAN_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE__BOOL 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
| return 0;
| ;
| return 0;
| }
configure:5493: result: yes
configure:5504: checking for uint32_t
configure:5504: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5504: $? = 0
configure:5504: result: yes
configure:5518: checking for uint8_t
configure:5518: gcc -c -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ conftest.c >&5
configure:5518: $? = 0
configure:5518: result: yes
configure:5538: checking for stdlib.h
configure:5538: result: yes
configure:5548: checking for GNU libc compatible malloc
configure:5572: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5572: $? = 0
configure:5572: ./conftest
configure:5572: $? = 0
configure:5582: result: yes
configure:5605: checking for stdlib.h
configure:5605: result: yes
configure:5615: checking for GNU libc compatible realloc
configure:5639: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5639: $? = 0
configure:5639: ./conftest
configure:5639: $? = 0
configure:5649: result: yes
configure:5673: checking for memset
configure:5673: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
conftest.c:78:6: warning: conflicting types for built-in function 'memset'
char memset ();
^~~~~~
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5673: $? = 0
configure:5673: result: yes
configure:5673: checking for regcomp
configure:5673: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5673: $? = 0
configure:5673: result: yes
configure:5673: checking for sqrt
configure:5673: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
conftest.c:80:6: warning: conflicting types for built-in function 'sqrt'
char sqrt ();
^~~~
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5673: $? = 0
configure:5673: result: yes
configure:5673: checking for strdup
configure:5673: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
conftest.c:81:6: warning: conflicting types for built-in function 'strdup'
char strdup ();
^~~~~~
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5673: $? = 0
configure:5673: result: yes
configure:5673: checking for strncasecmp
configure:5673: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
conftest.c:82:6: warning: conflicting types for built-in function 'strncasecmp'
char strncasecmp ();
^~~~~~~~~~~
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5673: $? = 0
configure:5673: result: yes
configure:5673: checking for strtol
configure:5673: gcc -o conftest -I/ifshk4/BC_PUB/biosoft/newblc/04.UsrHgcc/include -I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/ -L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/ conftest.c -lhts -llzma -lbz2 -lboost_system -lpthread -lncurses -lm -lz >&5
/usr/bin/ld: skipping incompatible /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libpthread.so when searching for -lpthread
/usr/bin/ld: warning: liblzma.so.0, needed by /ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib//libhts.so, may conflict with liblzma.so.5
configure:5673: $? = 0
configure:5673: result: yes
configure:5822: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by FxTools config.status 0.17, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on hk-login-38-4.hk.hpc
config.status:896: creating Makefile
config.status:896: creating config.h
config.status:1077: config.h is unchanged
config.status:1125: executing depfiles commands
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_c_compiler_gnu=yes