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BU-ISCIII/buisciii-tools v1.0.1
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@saramonzon saramonzon released this 01 Feb 13:04
· 993 commits to main since this release
1.0.1
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[1.0.1] - 2024-02-01 : https://github.com/BU-ISCIII/buisciii-tools/releases/tag/1.0.1

Credits

Code contributions to the hotfix:

Template fixes and updates

  • Added new line in buisciii_tools/bu_isciii/templates/viralrecon/ANALYSIS/lablog_viralrecon, in order to automatically rename ANALYSIS0X_MAG directory with the current date.
  • Introduced handling of flu-C in buisciii_tools/bu_isciii/templates/IRMA/ANALYSIS/ANALYSIS01_FLU_IRMA/04-irma/ lablog and create_irma_stats.sh
  • Small changes to buisciii_tools/bu_isciii/templates/viralrecon/RESULTS/viralrecon_results for blast and new excel_generator.py
  • Introduced better error handling in excel_generator.py. Now it can also be used for single files
  • Brought back PASS_ONLY to exometrio's exomiser_configfile.yml
  • #187 - Added new template for bacterial assembly. Allowing for short, long and hybrid assembly.
  • #190 - renamed some variables in create-summary_report from viralrecon template as their name was misleading and fixed a small typo in regex finding in excel_generator.py
  • #192 - Small changes in excel_generator.py to automatically merge pangolin/nextclade tables when more than 1 reference is found

Modules

Added enhancements

  • Added CHANGELOG
  • Added template for Pull Request
  • Added Contributing guidelines
  • Added github action to sync branches

Fixes

Changed

Removed

Requirements

Assets 2
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