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Implemented changes described in comments in the previous PR #13

Merged
merged 50 commits into from
Jan 30, 2024
Merged

Implemented changes described in comments in the previous PR #13

merged 50 commits into from
Jan 30, 2024

Commits on Jan 8, 2024

  1. Update analyze schema with Comments in previous PR. Added liting work… 

    …flow
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    luissian committed Jan 8, 2024
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  2. fixiing some liting

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    luissian committed Jan 8, 2024
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  3. fixiing more liting errors

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    luissian committed Jan 8, 2024
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  4. changed file extension for old python files

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    luissian committed Jan 8, 2024
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  5. fixing latest liting

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    luissian committed Jan 8, 2024
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  6. fixing latest liting 2

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    luissian committed Jan 8, 2024
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  7. fixing latest liting 3

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    luissian committed Jan 8, 2024
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Commits on Jan 16, 2024

  1. checking liting in functions which are defined the type of variable

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    luissian committed Jan 16, 2024
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Commits on Jan 17, 2024

  1. Checking testing file

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    luissian committed Jan 17, 2024
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  2. first draft to run test

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    luissian committed Jan 17, 2024
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  3. first draft to run test

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    luissian committed Jan 17, 2024
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  4. added deps to github action test

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    luissian committed Jan 17, 2024
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  5. Updated test and environment for conda installation

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    luissian committed Jan 17, 2024
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  6. Removed python packages from conda and move to pip

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    luissian committed Jan 17, 2024
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  7. remove Self from annotation

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    luissian committed Jan 17, 2024
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  8. liting

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    luissian committed Jan 17, 2024
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Commits on Jan 22, 2024

  1. Updated with comments in PR#13. Adding testing analyze schema with te… 

    …st data
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    luissian committed Jan 22, 2024
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  2. fixing liting and error testing

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    luissian committed Jan 22, 2024
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  3. Again trying to fix liting and testing

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    luissian committed Jan 22, 2024
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  4. modified schema input parameter

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    luissian committed Jan 22, 2024
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  5. correcting wrong path of schema

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    luissian committed Jan 22, 2024
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  6. including echo ls to know which is the working path

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    luissian committed Jan 22, 2024
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  7. including ls to know which is the working path

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    luissian committed Jan 22, 2024
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  8. removing variable

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    luissian committed Jan 22, 2024
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  9. activate conda environment

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    luissian committed Jan 22, 2024
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  10. added conda init before activate conda base

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    luissian committed Jan 22, 2024
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  11. activte conda env with the source command and the activate

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    luissian committed Jan 22, 2024
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  12. testing how to run prokka

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    luissian committed Jan 22, 2024
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  13. testing how to run prokka_2

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    luissian committed Jan 22, 2024
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  14. testing 1

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    luissian committed Jan 22, 2024
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  15. test2

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    luissian committed Jan 22, 2024
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  16. test3

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    luissian committed Jan 22, 2024
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  17. test4

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    luissian committed Jan 22, 2024
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  18. test5

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    luissian committed Jan 22, 2024
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  19. test5

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    luissian committed Jan 22, 2024
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  20. test6

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    luissian committed Jan 22, 2024
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  21. added kaleido package

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    luissian committed Jan 22, 2024
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Commits on Jan 23, 2024

  1. Udpated code with latest comment in PR

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    luissian committed Jan 23, 2024
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Commits on Jan 24, 2024

  1. replace deprecate setup.py for pyproject.toml

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    luissian committed Jan 24, 2024
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Commits on Jan 25, 2024

  1. reduce the 2 loop for checking the duplicated and sub allele

    @luissian
    luissian committed Jan 25, 2024
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  2. remove unnecesary comments

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    luissian committed Jan 25, 2024
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  3. testing new pyproject.toml file

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    luissian committed Jan 25, 2024
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  4. fixing liting and update test

    @luissian
    luissian committed Jan 25, 2024
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  5. update installation taranis for testing

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    luissian committed Jan 25, 2024
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  6. include all command in the same run

    @luissian
    luissian committed Jan 25, 2024
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  7. Split the number of cpus used for prokka and app

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    luissian committed Jan 25, 2024
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Commits on Jan 28, 2024

  1. commit to start with reference allele feature

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    luissian committed Jan 28, 2024
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  2. Including poetry.lock in gitignore

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    luissian committed Jan 28, 2024
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  3. Fixing liting

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    luissian committed Jan 28, 2024
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  4. Fixing liting

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    luissian committed Jan 28, 2024
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