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Enhancements reference alleles processes #18

Merged
merged 18 commits into from
Apr 2, 2024
Merged

Enhancements reference alleles processes #18

merged 18 commits into from
Apr 2, 2024

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saramonzon
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@saramonzon saramonzon commented Apr 1, 2024 •
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  • Added SeqCluster class from AlphaClust software
  • Chanted center allele selection: now the allele with more alleles with 0.9 identity threshold is selected as reference allele representative.
  • Updated default parameters for mash, blast and leiden resolution

@luissian luissian merged commit e5c903a into BU-ISCIII:develop Apr 2, 2024
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@luissian luissian luissian approved these changes

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@saramonzon @luissian