fixed bug when ignore merge codons

BU-ISCIII · Aug 6, 2024 · 9e9bad2 · 9e9bad2
1 parent 5991307
commit 9e9bad2
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/bin/ivar_variants_to_vcf.py b/bin/ivar_variants_to_vcf.py
@@ -722,6 +722,9 @@ def export_vcf(vcf_table, consensus=True):
             self.consensus_merge = consensus
             if not self.ignore_merge:
                 processed_vcf = self.process_vcf_df(vcf_table)
+            else:
+                processed_vcf = vcf_table
+
             try:
                 processed_vcf = processed_vcf.drop(["REF_CODON", "ALT_CODON"], axis=1)
             except KeyError: