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Example workflow for analyzing epigenome-wide DNA methylation data

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Example workflow for analyzing epigenome-wide DNA methylation data

This code uses large R packages and datasets (>3GB of RAM needed)
Before the workshop, please prepare your laptop:

  • Update R - you need to be running the most recent version (R 3.5.0 was released April 23, 2018)
  • Update RStudio - the easiest way to use R
  • Download this repository (see the Green button above) - you can download as a zip file and extract:
    • work through install_packages.R (located in the code/ folder) which includes updating your packages before the workshop.

Send questions to allan.just@mssm.edu
Or submit a Pull Request if you have a suggestion!

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Example workflow for analyzing epigenome-wide DNA methylation data

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