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| @prefix ex: <https://bigcat-um.github.io/sparql-examples/VHP4Safety/> . | ||
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix schema: <https://schema.org/> . | ||
| @prefix sh: <http://www.w3.org/ns/shacl#> . | ||
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| ex:001 a sh:SPARQLExecutable, | ||
| sh:SPARQLSelectExecutable ; | ||
| rdfs:comment "List all compounds with a PubChem identifier and optionally list the ToxBank Wiki link and roles."@en ; | ||
| sh:prefixes _:sparql_examples_prefixes ; | ||
| sh:select """PREFIX wd: <https://compoundcloud.wikibase.cloud/entity/> | ||
| PREFIX wdt: <https://compoundcloud.wikibase.cloud/prop/direct/> | ||
| SELECT ?cmp ?cmpLabel ?pubchem ?toxbank | ||
| (GROUP_CONCAT(DISTINCT ?roleLabel; separator=", ") AS ?roles) | ||
| WHERE { | ||
| ?cmp wdt:P13 ?pubchem . | ||
| OPTIONAL { ?cmp wdt:P4 ?toxbank } | ||
| OPTIONAL { ?cmp wdt:P17 ?role . ?role rdfs:label ?roleLabel} | ||
| SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } | ||
| } GROUP BY ?cmp ?cmpLabel ?pubchem ?toxbank""" ; | ||
| schema:target <https://compoundcloud.wikibase.cloud/query/> ; | ||
| schema:keywords "PubChem", "ToxBank", "role", "compound" . |
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| @prefix ex: <https://bigcat-um.github.io/sparql-examples/VHP4Safety/> . | ||
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix schema: <https://schema.org/> . | ||
| @prefix sh: <http://www.w3.org/ns/shacl#> . | ||
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| ex:001 a sh:SPARQLExecutable, | ||
| sh:SPARQLSelectExecutable ; | ||
| rdfs:comment "List all collections and the number of compounds in that collection."@en ; | ||
| sh:prefixes _:sparql_examples_prefixes ; | ||
| sh:select """PREFIX wd: <https://compoundcloud.wikibase.cloud/entity/> | ||
| PREFIX wdt: <https://compoundcloud.wikibase.cloud/prop/direct/> | ||
| SELECT ?collectionLabel (COUNT(DISTINCT ?compound) AS ?count) WHERE { | ||
| VALUES ?collectionType { wd:Q52 wd:Q54 wd:Q55 } | ||
| ?collection wdt:P1 ?collectionType . | ||
| ?compound wdt:P21 ?collection . | ||
| SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } | ||
| } GROUP BY ?collectionLabel | ||
| ORDER BY DESC(?count)""" ; | ||
| schema:target <https://compoundcloud.wikibase.cloud/query/> ; | ||
| schema:keywords "collection", "compound" . |
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| @prefix ex: <https://bigcat-um.github.io/sparql-examples/VHP4Safety/> . | ||
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix schema: <https://schema.org/> . | ||
| @prefix sh: <http://www.w3.org/ns/shacl#> . | ||
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| ex:001 a sh:SPARQLExecutable, | ||
| sh:SPARQLSelectExecutable ; | ||
| rdfs:comment "List all compounds of which the xenometabolism is known."@en ; | ||
| sh:prefixes _:sparql_examples_prefixes ; | ||
| sh:select """PREFIX wd: <https://compoundcloud.wikibase.cloud/entity/> | ||
| PREFIX wdt: <https://compoundcloud.wikibase.cloud/prop/direct/> | ||
| SELECT ?cmp ?cmpLabel ?xenometabolism | ||
| WHERE { | ||
| ?cmp wdt:P19 ?xenometabolism . | ||
| SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } | ||
| }""" ; | ||
| schema:target <https://compoundcloud.wikibase.cloud/query/> ; | ||
| schema:keywords "xenometabolism", "compound" . |
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| @@ -0,0 +1,25 @@ | ||
| @prefix ex: <https://bigcat-um.github.io/sparql-examples/VHP4Safety/> . | ||
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix schema: <https://schema.org/> . | ||
| @prefix sh: <http://www.w3.org/ns/shacl#> . | ||
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| ex:001 a sh:SPARQLExecutable, | ||
| sh:SPARQLSelectExecutable ; | ||
| rdfs:comment "List all compounds in the HBM4EU priority substances collection with identifier wd:Q56, optionally with their InChIKey and PubChem CID identifiers."@en ; | ||
| sh:prefixes _:sparql_examples_prefixes ; | ||
| sh:select """PREFIX wd: <https://compoundcloud.wikibase.cloud/entity/> | ||
| PREFIX wdt: <https://compoundcloud.wikibase.cloud/prop/direct/> | ||
| SELECT DISTINCT ?compound ?compoundLabel | ||
| (CONCAT("#compound/", SUBSTR(STR(?compound), 45)) AS ?compoundUrl) | ||
| ?inchikey ?pubchem | ||
| WHERE { | ||
| VALUES ?collection { wd:Q56 } | ||
| ?compound wdt:P21 ?collection . | ||
| OPTIONAL { ?compound wdt:P10 ?inchikey } | ||
| OPTIONAL { ?compound wdt:P13 ?pubchem } | ||
| SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } | ||
| }""" ; | ||
| schema:target <https://compoundcloud.wikibase.cloud/query/> ; | ||
| schema:keywords "HBM4EU", "compound", "collection", "InChIKey", "PubChem" . |