Main new feature is adding support for using output of strobealign-aemb. Use of the SemiBin command (instead of SemiBin2) will continue to work, but print a warning and set a delay to ask users to upgrade.
Full ChangeLog
- SemiBin: Support running SemiBin with strobealign-aemb (
--abundance/-a) - citation: Add citation subcommand
- SemiBin1: Introduce separate SemiBin1 command
- internal: Code simplification and refactor
- deprecation: Deprecate
--orf-finder=fraggenescanoption - Update abundance normalization
- SemiBin: do not use more processes than can be taken advantage of (#155)