RLS Version 1.4.0 #365
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build Status | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: | |
| - "3.6" | |
| - "3.7" | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| steps: | |
| - name: Checking code | |
| uses: actions/checkout@v3 | |
| - name: Setup miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run : | | |
| conda install -c bioconda -c conda-forge \ | |
| ngless pyrodigal megahit paladin pandas requests atomium tzlocal \ | |
| "scikit-learn<1.3.0" "joblib<1.3.0" | |
| conda install pytest | |
| pip install . | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest macrel/tests | |
| - name: Test Macrel CLI | |
| shell: bash -l {0} | |
| run: | | |
| ./run-tests.sh |