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MIN Update AmPEP links
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luispedro committed Jan 2, 2024
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Expand Up @@ -6,15 +6,15 @@ To run this code, you must download the data from the original sources:

1. _AmPEP: Sequence-based prediction of antimicrobial peptides using
distribution patterns of amino acid properties and random forest_ by Pratiti
Bhadra, Jielu Yan, Jinyan Li, Simon Fong & Shirley W. I. Siu Scientific
Bhadra, Jielu Yan, Jinyan Li, Simon Fong & Shirley W. I. Siu Scientific
Reports volume 8, Article number: 1697 (2018)
https://www.nature.com/articles/s41598-018-19752-w#Sec9
2. _iAMP-2L: a two-level multi-label classifier for identifying antimicrobial
peptides and their functional types_ Xiao X, Wang P, Lin WZ, Jia JH, Chou
KC. Anal Biochem. 2013, 436(2):168-77. doi: 10.1016/j.ab.2013.01.019.
3. _A Web Server and Mobile App for Computing Hemolytic Potency of Peptides_
Kumardeep Chaudhary, Ritesh Kumar, Sandeep Singh, Abhishek Tuknait, Ankur
Gautam, Deepika Mathur, Priya Anand, Grish C. Varshney & Gajendra P. S.
Gautam, Deepika Mathur, Priya Anand, Grish C. Varshney & Gajendra P. S.
Raghava Scientific Reports volume 6, Article number: 22843 (2016)
https://www.nature.com/articles/srep22843

Expand All @@ -25,8 +25,8 @@ You can adapt the code below:
mkdir -p data
cd data/

wget 'https://svwh.dl.sourceforge.net/project/axpep/AmPEP_datasets/M_model_train_AMP_sequence.zip'
wget 'https://svwh.dl.sourceforge.net/project/axpep/AmPEP_datasets/M_model_train_nonAMP_sequence.zip'
wget https://github.com/ShirleyWISiu/AmPEP/raw/master/M_model_train_AMP_sequence.zip
wget https://github.com/ShirleyWISiu/AmPEP/raw/master/M_model_train_nonAMP_sequence.zip
unzip M_model_train_AMP_sequence.zip
unzip M_model_train_nonAMP_sequence.zip

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