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tugbadogan edited this page Jan 28, 2016 · 2 revisions

  • mrFAST: Our default Illumina read mapper that finds both indels and mismatches and performs iterative search to increase mapping sensitivity. Specifically designed for copy number variation and structural variation analysis.

  • mrsFAST: Our alternative Illumina read mapper that finds only mismatches to increase mapping speed. Also supports bisulfite mapping.

  • drFAST: Read mapper for di-base color-space reads generated with the SOLiD platform.

  • NovelSeq: Novel sequence insertion discovery framework.

  • SCALCE: Tool for compression of FASTQ files.

  • SPLITREAD: Detection of structural variants and indels from genome and exome sequencing data

  • VariationHunter: Structural variation calling algorithm using read pairmapping information including suboptimal alignments.

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