This algorithm is designed to search for carbohydrate binding TRP residues in a given protein PDB file. This was developed by Provart lab from University of Toronto.
Instructions: download the parameters files and the script cho_screening.pl prepare: setup the pdb file path in cho_screening.pl run: perl cho_screening.pl pdb_name output: if there are binding TRP residues in the given PDB file, those residues will be printed out.
example: perl cho_screening.pl test
output: TRP A 254 TRP A 311 TRP B 254 TRP B 311