Merge branch 'master' into master

BioContainers · Oct 23, 2023 · d6e5139 · d6e5139
2 parents 7d7d315 + 9aa116b
commit d6e5139
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diff --git a/combinations/bandage_ng:2022.09-0.tsv b/combinations/bandage_ng:2022.09-0.tsv
@@ -1,2 +1,2 @@
 #targets	base_image	image_build
-bandage_ng=2022.09	quay.io/bioconda/base-glibc-debian-bash:latest	0
+bandage_ng=2022.09	quay.io/bioconda/base-glibc-debian-bash:latest	1
diff --git a/combinations/hash.tsv b/combinations/hash.tsv
@@ -478,4 +478,8 @@ pretextgraph=0.0.6,ucsc-bigwigtobedgraph=448
 sra-tools=3.0.8,pigz=2.6
 pydeseq2=0.4.1,biopython=1.81,numpy=1.26.0,pandas=2.1.1,pysam=0.21.0,matplotlib=3.8,gzip=1.12,hybkit=0.3.3,natsort=7.1.1
 r-ggplot2=3.4.3,r-gprofiler2=0.2.2
+pgzip=0.3.5
+pandas=2.1.1,kcounter=0.1.1
+macs2=2.2.9.1,picard=3.1.0
+bamutil=1.0.15,samtools=1.18,seqkit=2.5.1
 r-taxonomizr=0.10.2,r-tidyverse=2.0.0
diff --git a/...2-083381aecaa19a8408245c9c4ff1820657521f4c:3a17a10be9d92a8fb80a979523f487045a241046-0.tsv b/...2-083381aecaa19a8408245c9c4ff1820657521f4c:3a17a10be9d92a8fb80a979523f487045a241046-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-hmisc=5.1_1,r-optparse=1.7.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-1aad242d5f1d2e9dfa491dd17a85e1417a2b2d64:edd0ca8b9789e275d88ae57fa62a761bbd7102a5-0.tsv b/...2-1aad242d5f1d2e9dfa491dd17a85e1417a2b2d64:edd0ca8b9789e275d88ae57fa62a761bbd7102a5-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+hicexplorer=3.7.2,samtools=1.9	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-56c24a5843d9ec193f98009c910a7963a36f5e6a:f511e0746c57423f611843ab426e518afccb8e29-0.tsv b/...2-56c24a5843d9ec193f98009c910a7963a36f5e6a:f511e0746c57423f611843ab426e518afccb8e29-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pandas=1.1.4,click=8.0.1,matchms=0.23.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-74f7fff99e783f30801ae0f50d6eca5a9df6e0cb:5daa30fd066bb413d4233065151ec304444a14f2-0.tsv b/...2-74f7fff99e783f30801ae0f50d6eca5a9df6e0cb:5daa30fd066bb413d4233065151ec304444a14f2-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-taxonomycleanr=1.6.2,r-base=4.2.3,r-dplyr=1.1.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-b7e53cd69aa68e3a0ad19e9bb83668d74440fb38:ce98f55ec41c458fd072be329239c3b588e643ab-0.tsv b/...2-b7e53cd69aa68e3a0ad19e9bb83668d74440fb38:ce98f55ec41c458fd072be329239c3b588e643ab-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-tmap=3.3,r-sf=1.0_12,r-dplyr=1.1.1,r-base=4.2.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-d17f49d7fc1be400719bb86756f1cd6d895538b0:6ba741720fbc55d340d3dfa54f5f72977fde0217-0.tsv b/...2-d17f49d7fc1be400719bb86756f1cd6d895538b0:6ba741720fbc55d340d3dfa54f5f72977fde0217-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-cluster=2.1.4,r-tidyverse=2.0.0,r-dplyr=1.1.1,r-base=4.2.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-d466c5c2c348e2ce1bc850ec97116b3d6eb99d43:509f4d2a86060dc0cf0ea3bd01d92c7131ac9a3a-0.tsv b/...2-d466c5c2c348e2ce1bc850ec97116b3d6eb99d43:509f4d2a86060dc0cf0ea3bd01d92c7131ac9a3a-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+sortmerna=4.3.6,samtools=1.17	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/...2-dd6fc3ba47b979c0952cd0d98a398b72a48c092a:a6f957fe99e6ca9075c3da8577a6f837a93a05b6-0.tsv b/...2-dd6fc3ba47b979c0952cd0d98a398b72a48c092a:a6f957fe99e6ca9075c3da8577a6f837a93a05b6-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-dismo=1.3_14,r-gbm=2.1.8,r-ggplot2=3.4.2,r-base=4.3.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
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		@@ -0,0 +1,2 @@
		#targets base_image image_build
		r-hmisc=5.1_1,r-optparse=1.7.3 quay.io/bioconda/base-glibc-busybox-bash:latest 0
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		@@ -0,0 +1,2 @@
		#targets base_image image_build
		hicexplorer=3.7.2,samtools=1.9 quay.io/bioconda/base-glibc-busybox-bash:latest 0
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		@@ -0,0 +1,2 @@
		#targets base_image image_build
		pandas=1.1.4,click=8.0.1,matchms=0.23.1 quay.io/bioconda/base-glibc-busybox-bash:latest 0
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		@@ -0,0 +1,2 @@
		#targets base_image image_build
		r-taxonomycleanr=1.6.2,r-base=4.2.3,r-dplyr=1.1.3 quay.io/bioconda/base-glibc-busybox-bash:latest 0
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		#targets base_image image_build
		r-tmap=3.3,r-sf=1.0_12,r-dplyr=1.1.1,r-base=4.2.3 quay.io/bioconda/base-glibc-busybox-bash:latest 0
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		@@ -0,0 +1,2 @@
		#targets base_image image_build
		r-cluster=2.1.4,r-tidyverse=2.0.0,r-dplyr=1.1.1,r-base=4.2.3 quay.io/bioconda/base-glibc-busybox-bash:latest 0
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		#targets base_image image_build
		sortmerna=4.3.6,samtools=1.17 quay.io/bioconda/base-glibc-busybox-bash:latest 0
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		#targets base_image image_build
		r-dismo=1.3_14,r-gbm=2.1.8,r-ggplot2=3.4.2,r-base=4.3.0 quay.io/bioconda/base-glibc-busybox-bash:latest 0