Convert to httr2 #59
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- download, head calls updated
- TODO: need to pass proxy through properly to internal functions. This
previously was not needed because set the proxy globally which is no longer
an option
creat a helper function to get proxy information
|
If testing with hubs should use the changes and PR |
LiNk-NY
approved these changes
Feb 17, 2025
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This looks good to me. I was able to download the resource behind a proxy:
### docker run -d --rm --name squid -p 3128:3128 ubuntu/squid
library(AnnotationHub)
proxy <- "http://localhost:3128"
setAnnotationHubOption("PROXY", proxy)
ah <- AnnotationHub()
# Assuming valid proxy connection through 'http://localhost:3128'
# If you experience connection issues consider using 'localHub=TRUE'
# [ truncated ...]
ah[["AH69303"]]
GRanges object with 324754 ranges and 4 metadata columns:
seqnames ranges strand | source type score phase
<Rle> <IRanges> <Rle> | <factor> <factor> <numeric> <integer>
[1] OOHO01000004.1 5896-6324 - | ensembl transcript NA <NA>
[2] OOHO01000004.1 5896-6324 - | ensembl exon NA <NA>
[3] OOHO01000004.1 10788-13607 - | ensembl transcript NA <NA>
[4] OOHO01000004.1 13277-13607 - | ensembl exon NA <NA>
[5] OOHO01000004.1 12737-12866 - | ensembl exon NA <NA>
... ... ... ... . ... ... ... ...
[324750] OOHO01000042.1 3682-3884 + | ensembl exon NA <NA>
[324751] OOHO01000042.1 5691-5804 + | ensembl exon NA <NA>
[324752] OOHO01000042.1 7630-7716 + | ensembl exon NA <NA>
[324753] OOHO01000042.1 9517-9625 + | ensembl exon NA <NA>
[324754] OOHO01000042.1 11770-11805 + | ensembl exon NA <NA>
-------
seqinfo: 69 sequences from fAnaTes1.1 genome; no seqlengths
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Convert from httr to httr2