Merge branch 'devel' of github.com:Bioconductor/BiocCertificate into … #2
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| name: Build shiny Docker image and generate Galaxy wrapper | |
| on: | |
| workflow_dispatch: {} | |
| push: {} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Extract metadata for container image | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ghcr.io/${{ github.repository }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| with: | |
| platforms: linux/amd64 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push container image to ghcr | |
| uses: docker/build-push-action@v4 | |
| with: | |
| file: Dockerfile | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| platforms: linux/amd64 | |
| - name: Set variables | |
| id: vars | |
| run: | | |
| echo "container=${{ steps.meta.outputs.tags }}" >> $GITHUB_OUTPUT | |
| echo "source=https://github.com/${{github.repository}}" >> $GITHUB_OUTPUT | |
| NAME="$(echo '${{github.repository}}' | awk -F'/' '{print $2}')" | |
| echo "name=$NAME" >> $GITHUB_OUTPUT | |
| echo "id=$(echo $NAME | tr '[:upper:]' '[:lower:]')" >> $GITHUB_OUTPUT | |
| - name: Generate wrapper | |
| run: | | |
| cp .github/scripts/galaxy-wrapper-template.xml galaxy-wrapper.xml | |
| sed -i 's#{{{CONTAINER}}}#${{steps.vars.outputs.container}}#g' galaxy-wrapper.xml | |
| sed -i 's#{{{SOURCE}}}#${{steps.vars.outputs.source}}#g' galaxy-wrapper.xml | |
| sed -i 's#{{{NAME}}}#${{steps.vars.outputs.name}}#g' galaxy-wrapper.xml | |
| sed -i 's#{{{ID}}}#${{steps.vars.outputs.id}}#g' galaxy-wrapper.xml | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| git config user.name github-actions | |
| git config user.email github-actions@github.com | |
| git add galaxy-wrapper.xml | |
| git commit -m "Update Galaxy Wrapper $(TZ=EST date '+%Y-%m-%d_%H-%M')" | |
| git push |