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Version 1.2 of DIPS-Plus includes new Jupyter notebooks showing users how to featurize PDB file inputs and how to train new deep learning models for protein interface prediction using the feature set provided by DIPS-Plus.
A new Zenodo record is now associated with this repository (DOI: 10.5281/zenodo.8071136). This provides supplementary data containing (1) new residue-level annotations of intrinsic disorder regions (IDRs) and (2) raw multiple sequence alignments for each supervised chain in DIPS-Plus, generated using Jackhmmer and AlphaFold's small version of the Big Fantastic Database (BFD). Included with (1) are also versions of each DIPS-Plus pruned pair representation in the HDF5 file format (i.e., .hdf5 file equivalents), to make it simple for users to work with these pair representations in whatever programming language one would like to use.