What's Changed
Additions:
- Adds results with AlphaFold 3 predicted structures (now the default), which yield a 5-10% performance improvement over ESMFold structures on average
- Adds results for the new Chai-1 model from Chai Discovery
- Adds a new inference sweep pipeline for HPC clusters to allow users to quickly run an exhaustive sweep of all baseline methods, datasets, and tasks e.g., using generated batch scripts and a SLURM scheduler
Updates:
- Updates all Zenodo links to point to the latest version of the project's Zenodo record, which now includes the above-mentioned AlphaFold 3 predicted structures and baseline method results using them
- Updates documentation project-wide according to the additions listed above
Fixes:
- Fixes some CI testing issues
New Contributors
- @amorehead made their first contribution in #7
Full Changelog: v0.4.0...v0.5.0
Contributors
amorehead