Merge pull request #263 from DylanCarbone/master

Fix of pages
BiologicalRecordsCentre · Jun 10, 2024 · 811de2e · 811de2e
2 parents 170bd5d + 4ac453a
commit 811de2e
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diff --git a/.gitignore b/.gitignore
@@ -11,8 +11,9 @@
 vignette_frescalo.exe
 sparta.Rproj
 misc/
-/doc/
 /Meta/
 create_unicorn.r
 error_reproduction_scripts/
-docs
+inst/JAGS
+vignettes/wincomm.cmd
+vignettes/myFolder
diff --git a/R/detect_jags.r b/R/detect_jags.r
@@ -2,5 +2,5 @@
 #' @importFrom runjags testjags
 #' 
 detect_jags <- function(){
-    return(suppressWarnings(runjags::testjags(silent = TRUE)$JAGS.found))
+        return(suppressWarnings(runjags::testjags(silent = TRUE)$JAGS.found))
 }
diff --git a/README.md b/README.md
@@ -40,6 +40,6 @@ If you have difficulties installing sparta using this method try updating your v
 Vignette/Tutorial
 ----------------
 
-We have written a vignette to support the package which can view [here](http://biologicalrecordscentre.github.io/sparta/articles/sparta_vignette.html)
+We have written a vignette to support the package which can viewed [here](https://biologicalrecordscentre.github.io/sparta/articles/vignette.html)
 
 *PLEASE NOTE THAT SINCE THIS PACKAGE IS IN DEVELOPMENT THE STRUCTURE AND FUNCTIONALITY OF THE PACKAGE ARE LIKELY TO CHANGE OVER TIME. WE WILL TRY TO KEEP THE TUTORIALS UP TO DATE SO THAT IT WORKS WITH THE CURRENT MASTER VERSION ON GITHUB*
diff --git a/docs/articles/vignette.html b/docs/articles/vignette.html
diff --git a/docs/articles/vignette_files/figure-html/unnamed-chunk-15-1.png b/docs/articles/vignette_files/figure-html/unnamed-chunk-15-1.png
diff --git a/docs/articles/vignette_files/figure-html/unnamed-chunk-17-1.png b/docs/articles/vignette_files/figure-html/unnamed-chunk-17-1.png
diff --git a/docs/articles/vignette_files/figure-html/unnamed-chunk-18-1.png b/docs/articles/vignette_files/figure-html/unnamed-chunk-18-1.png
diff --git a/docs/articles/vignette_files/figure-html/unnamed-chunk-22-1.png b/docs/articles/vignette_files/figure-html/unnamed-chunk-22-1.png
diff --git a/docs/articles/vignette_files/figure-html/unnamed-chunk-31-1.png b/docs/articles/vignette_files/figure-html/unnamed-chunk-31-1.png
diff --git a/docs/articles/vignette_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/vignette_files/figure-html/unnamed-chunk-4-1.png
diff --git a/docs/articles/vignette_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/vignette_files/figure-html/unnamed-chunk-5-1.png
diff --git a/docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js b/docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
diff --git a/docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map b/docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
diff --git a/docs/deps/bootstrap-5.3.1/bootstrap.min.css b/docs/deps/bootstrap-5.3.1/bootstrap.min.css
diff --git a/docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js b/docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js
diff --git a/docs/deps/clipboard.js-2.0.11/clipboard.min.js b/docs/deps/clipboard.js-2.0.11/clipboard.min.js
diff --git a/docs/deps/data-deps.txt b/docs/deps/data-deps.txt
@@ -0,0 +1,4 @@
+<script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script>
+<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no" />
+<link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet" />
+<script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script>