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Merge pull request #211 from Bioprotocols/danbryce/issue210
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Removed submodule for container-ontology
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danbryce authored Jan 2, 2024
2 parents 42b899c + 637e405 commit 2e2bd88
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6 changes: 0 additions & 6 deletions .gitmodules
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@@ -1,6 +0,0 @@
[submodule "labop-check"]
path = labop-check
url = https://github.com/Bioprotocols/labop-check.git
[submodule "container-ontology"]
path = container-ontology
url = https://github.com/rpgoldman/container-ontology
11 changes: 0 additions & 11 deletions README.md
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Expand Up @@ -9,17 +9,6 @@ The LabOP package is available by PyPI:
pip3 install labop
```

The LabOP repo also includes git submodules containing the optional utility `labop-check` for checking consistency of protocol representations and a demo version of the `container-ontology` which provides standardized descriptions for laboratory containers. These are currently not available as packages. If you wish to use these you will have to clone the LabOP repo and install each of these separately:

```
git clone https://github.com/Bioprotocols/labop
pip3 install .
cd labop/labop-check
pip3 install .
cd ../container-ontology
pip3 install .
```

LabOP visualizations currently depend on the `graphviz` application. To install graphviz, run (per https://github.com/ts-graphviz/setup-graphviz):
* Mac: `brew install graphviz`
* Linux: `apt-get install graphviz libgraphviz-dev pkg-config`
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1 change: 0 additions & 1 deletion container-ontology
Submodule container-ontology deleted from e699f0

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