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update notebook
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@ilkilic
ilkilic committed Aug 27, 2024
1 parent 9f89290 commit 4273abd
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Showing 4 changed files with 260 additions and 140 deletions.
10 changes: 5 additions & 5 deletions examples/simplecell/config/extract_config/simplecell_config.json
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Original file line number Diff line number Diff line change
Expand Up @@ -367,7 +367,7 @@
{
"efeature": "Spikecount",
"protocol": "IDrest",
"amplitude": 0.256,
"amplitude": 0.2,
"tolerance": 0.1,
"efeature_name": null,
"weight": 1.0,
Expand All @@ -378,7 +378,7 @@
{
"efeature": "mean_frequency",
"protocol": "IDrest",
"amplitude": 0.256,
"amplitude": 0.2,
"tolerance": 0.1,
"efeature_name": null,
"weight": 1.0,
Expand All @@ -389,7 +389,7 @@
{
"efeature": "voltage_base",
"protocol": "IDrest",
"amplitude": 0.256,
"amplitude": 0.2,
"tolerance": 0.1,
"efeature_name": null,
"weight": 1.0,
Expand Down Expand Up @@ -433,7 +433,7 @@
{
"efeature": "voltage_base",
"protocol": "IV",
"amplitude": -0.147,
"amplitude": -0.1,
"tolerance": 0.1,
"efeature_name": null,
"weight": 1.0,
Expand All @@ -444,7 +444,7 @@
{
"efeature": "ohmic_input_resistance_vb_ssse",
"protocol": "IV",
"amplitude": -0.147,
"amplitude": -0.1,
"tolerance": 0.1,
"efeature_name": null,
"weight": 1.0,
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66 changes: 33 additions & 33 deletions examples/simplecell/config/features/simplecell.json
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Original file line number Diff line number Diff line change
Expand Up @@ -2,53 +2,53 @@
"efeatures": [
{
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"protocol_name": "IDrest_0.2",
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"Threshold": -48.99374771118164
}
},
{
Expand Down Expand Up @@ -104,56 +104,56 @@
},
{
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],
"protocols": [
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],
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{
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"name": "IDrest_0.256.soma.v",
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"location": "soma",
"variable": "v"
}
Expand Down Expand Up @@ -187,21 +187,21 @@
"stochasticity": false
},
{
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"location": "soma",
"variable": "v"
}
Expand Down
48 changes: 28 additions & 20 deletions examples/simplecell/final.json
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Original file line number Diff line number Diff line change
Expand Up @@ -9,34 +9,42 @@
"iteration": null,
"synapse_class": null,
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"IV_-0.1.soma.v.ohmic_input_resistance_vb_ssse": 1060.243113329033
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"validation_fitness": {},
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"seed": 1,
"pdfs": []
"pdfs": [
"/gpfs/bbp.cscs.ch/home/ikilic/workspace/BluePyEModel/examples/simplecell/figures/simplecell/optimisation/emodel=simplecell__etype=cADpyr__species=rat__brain_region=SSCX__seed=1__optimisation.pdf",
"/gpfs/bbp.cscs.ch/home/ikilic/workspace/BluePyEModel/examples/simplecell/figures/simplecell/traces/all/emodel=simplecell__etype=cADpyr__species=rat__brain_region=SSCX__seed=1__traces.pdf",
"/gpfs/bbp.cscs.ch/home/ikilic/workspace/BluePyEModel/examples/simplecell/figures/simplecell/scores/all/emodel=simplecell__etype=cADpyr__species=rat__brain_region=SSCX__seed=1__scores.pdf",
"/gpfs/bbp.cscs.ch/home/ikilic/workspace/BluePyEModel/examples/simplecell/figures/simplecell/thumbnail/all/emodel=simplecell__etype=cADpyr__species=rat__brain_region=SSCX__seed=1__thumbnail.png",
"/gpfs/bbp.cscs.ch/home/ikilic/workspace/BluePyEModel/examples/simplecell/figures/simplecell/distributions/all/emodel=simplecell__etype=cADpyr__species=rat__brain_region=SSCX__parameters_distribution.pdf",
"/gpfs/bbp.cscs.ch/home/ikilic/workspace/BluePyEModel/examples/simplecell/figures/simplecell/parameter_evolution/emodel=simplecell__etype=cADpyr__species=rat__brain_region=SSCX__seed=1__evo_parameter_density.pdf"
]
}
}
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