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Specify the different formats recording_name should have #58

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merged 3 commits into from
Oct 3, 2023
Merged

Specify the different formats recording_name should have #58

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Specify the different formats recording_name should ahve in FitnessCa…
Oct 3, 2023
ca76320
lint fix
Oct 3, 2023
ffdf9fe
Change phrasing
Oct 3, 2023
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6 changes: 6 additions & 0 deletions bluepyemodel/evaluation/fitness_calculator_configuration.py
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Original file line number Diff line number Diff line change
Expand Up @@ -108,6 +108,9 @@ def __init__(
{"efel_feature_name": str, "protocol_name": str, "recording_name": str,
"mean": float, "std": float, "efel_settings": dict}
]

here, recording_name should have the format ``f"{protocol_name}.{location}.v"``,
e.g. ``"IV_0.soma.v"``
protocols (list of dict): contains the description of the protocols of the model
in the format returned by the method as_dict of the ProtocolConfiguration class:

Expand All @@ -117,6 +120,9 @@ def __init__(
{"name": str, "stimuli": list of dict, "recordings": list of dict,
"validation": bool}
]

here, in each recordings' dict, the ``"name"`` value should have the format
``f"{location}.v"``, e.g. ``"soma.v"``
name_rmp_protocol (str or list): name and amplitude of protocol
whose features are to be used as targets for the search of the RMP.
e.g: ``["IV", 0]`` or ``"IV_0"``
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