Migrate to MorphIO (#755)

BlueBrain · Apr 15, 2021 · 77a4e1a · 77a4e1a
1 parent 5e8d157
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diff --git a/README.md b/README.md
@@ -47,6 +47,10 @@ NeuroM documentation is built and hosted on [readthedocs](https://readthedocs.or
 * [latest snapshot](http://neurom.readthedocs.org/en/latest/)
 * [latest release](http://neurom.readthedocs.org/en/stable/)
 
+## Migration to v2
+
+Refer to [the doc page](https://neurom.readthedocs.io/en/latest/migration_v2.html) on this topic.
+
 ## Installation
 
 It is recommended that you use [`pip`](https://pip.pypa.io/en/stable/) to install

diff --git a/apps/morph_stats b/apps/morph_stats
@@ -33,8 +33,9 @@ import json
 import logging
 import sys
 
+from morphio import SomaError
 import neurom as nm
-from neurom import exceptions
+from neurom.exceptions import ConfigError
 from neurom.apps import get_config
 from neurom.apps.morph_stats import (extract_stats, generate_flattened_dict,
                                      get_header, sanitize_config, full_config,
@@ -45,7 +46,7 @@ from neurom.utils import NeuromJSON
 L = logging.getLogger(__name__)
 
 IGNORABLE_EXCEPTIONS = {
-    'SomaError': exceptions.SomaError,
+    'SomaError': SomaError,
 }
 
 
@@ -95,7 +96,7 @@ def main(args):
         try:
             config = get_config(args.config, EXAMPLE_CONFIG)
             config = sanitize_config(config)
-        except exceptions.ConfigError as e:
+        except ConfigError as e:
             L.error(str(e))
             sys.exit(1)
 

diff --git a/apps/raw_data_check b/apps/raw_data_check
diff --git a/benchmarks/benchmarks.py b/benchmarks/benchmarks.py
diff --git a/doc/source/api-dev.rst b/doc/source/api-dev.rst