2.17.0

What's Changed

• Fix docs by @heerener in #84
• Update build_neurodamus.sh with --only-neuron by @iomaganaris in #89
• Fix bug with duplicate count of synapses by @ferdonline in #87
• [BBPBGLIB-1097] Reorganization of unit/integration tests by @ferdonline in #83
• Build recipe: remove shallow clone to meet the version requirement of latest setuptools by @WeinaJi in #90
• Implement chunking mechanism for loading synapses in dryrun mode by @st4rl3ss in #88
• [BBPBGLIB-1092] Add unit tests for CLI options by @jorblancoa in #86
• CI fix for python setup.py egg_info error by @ferdonline in #95
• Fast & lightweight dry run by @ferdonline in #91
• [BBPBGLIB-1027] Fix: Load Balance with multi-populations by @ferdonline in #92
• Fix unit test: new morphology test file to fulfil MorphIO change by @WeinaJi in #104
• Fix call to trim_memory on non-GNU C libraries by @JCGoran in #106
• Fix memory usage reporting on MacOS by @JCGoran in #105
• Fix netstim_inhpoisson.mod for CoreNEURON direct mode by @iomaganaris in #94
• Modernize the setup infractructure slightly. by @matz-e in #98
• Update documentation for new synapse estimate algorithm by @st4rl3ss in #99
• CoreConfig: write_report_count() should always create a new report.conf by @jorblancoa in #107
• [BBPBGLIB-1093] Move scientific tests from blueconfigs by @jorblancoa in #103
• Changelog for 2.17.0 by @WeinaJi in #108

New Contributors

• @JCGoran made their first contribution in #106
• @matz-e made their first contribution in #98

Full Changelog: 2.16.6...2.17.0

2.16.6

What's Changed

• Workflow rule: CI_COMMIT_TAG by @heerener in #74
• Manual container versions by @heerener in #72
• Added global integration tests for dryrun workflow by @st4rl3ss in #73
• protect numpy.concatenate empty tuple in get_local_gids by @WeinaJi in #53
• Container fixes by @heerener in #75
• [BBPP134-1022] Handling exceptions from NEURON during emodel loading by @WeinaJi in #80
• Use default dt value of NEURON in WholeCell load balancing by @iomaganaris in #81
• Fix conversion from sonata parameter to neurodamus internal key : amp_cv -> AmpCV by @WeinaJi in #79
• Updated changelog for 2.16.6 by @iomaganaris in #82

Full Changelog: 2.16.5...2.16.6

2.16.5

What's Changed

• Memory estimation improvements by @ferdonline in #56
• Add report dt to the logging by @jorblancoa in #59
• Update unit test references by @jorblancoa in #61
• [BBPBGLIB-1067] Implement 'node_sets_file' resolution order by @jorblancoa in #55
• Refactor dry run stats to its own class. Fixed logic to count synapses by @ferdonline in #60
• [HPCTM-1824] Introducing a temporary set for faster lookup in the src_target gids by @jorblancoa in #63
• [BBPBGLIB-1055] Support "" as nrnPath by @jorblancoa in #65
• Remove ranks-cpus warning as can be inaccurate by @1uc in #66
• [BBPBGLIB-1044] Use libsonata to read the spikes by @jorblancoa in #70
• [BBPBGLIB-1069] Added nodes suggestions and more improvements by @st4rl3ss in #64
• BBPBGLIB-1076 Make all edge managers set load_offsets at init by @ferdonline in #69

Full Changelog: 2.16.4...2.16.5

2.16.4

What's Changed

• Modernize ALU. by @1uc in #48
• [HPCTM-1793] Add a Dockerfile for building neurodamus image by @WeinaJi in #44
• Build docker images on gitlab by @heerener in #45 and #52
• Run the simulation test nightly instead of on PRs and main by @heerener in #54
• BBPBGLIB-1061 SONATA conf: Dont map to internal connectivity by @ferdonline in #43
• [BBPBGLIB-556] Full estimate of memory consumption by @st4rl3ss in #32
• [BBPBGLIB-1042] GapJunctionManager: filter source target by population by @WeinaJi in #42

Full Changelog: 2.16.3...2.16.4

2.16.3

What's Changed

• Share GluSynapseHelper.hoc with public users by @WeinaJi in #47
• Read 'electrodes_file' field from libsonata by @jorblancoa in #23
• ci git clone set --depth=1 by @anilbey in #46
• Print statistics of nodewise memory usage. by @1uc in #29
• [BBPBGLIB-1060] Remove CoreConfig.mod and enable CoreNEURON execution via NEURON Python API by @iomaganaris in #41
• Update changelog for 2.16.3 version by @iomaganaris in #50

New Contributors

• @jorblancoa made their first contribution in #23
• @anilbey made their first contribution in #46
• @1uc made their first contribution in #29

Full Changelog: 2.16.2...2.16.3

2.16.2

What's Changed

• Skip CORENEURON unit tests pending for a fix from NEURON by @WeinaJi in #38
• Use 0-based gid for reading GlioVascular sonata edges file by @WeinaJi in #28
• Propagate the log level correctly from the CLI option to Neurodamus class by @WeinaJi in #31
• import h5py in the function call to filter numpy warnings by @WeinaJi in #37
• ChangeLog for 2.16.2 by @WeinaJi in #40

Full Changelog: 2.16.1...2.16.2

2.16.1

What's Changed

• [BBPBGLIB-1044] Sonata Replay by @ferdonline in #8
• Update CoreConfig.mod for latest CoreNEURON changes by @olupton in #18
• [BBPBGLIB-1030] Reject *.sonata nodes and edges file by @WeinaJi in #19
• Copy open source required doc files from branch publication/nbS1-2023 into main by @WeinaJi in #20
• [BBPBGLIB-712] Estimate memory usage for synapse and connection by @st4rl3ss in #22
• Breaking enable_reports into pieces by @ferdonline in #24
• [NOTICKET] Add PR template by @ferdonline in #25
• [BBPBGLIB-851]Warning on cao_CR if not the same as extracellular_calcium by @WeinaJi in #26
• use libsonata API to read the keys by @WeinaJi in #30
• Preserve the order of stimulus injection & CI fix by @iomaganaris in #33
• From Sonata 0-based spikes to 1-based by @ferdonline in #35
• Update change log for 2.16.1 by @WeinaJi in #36

New Contributors

• @olupton made their first contribution in #18
• @WeinaJi made their first contribution in #19
• @st4rl3ss made their first contribution in #22
• @iomaganaris made their first contribution in #33

Full Changelog: 2.16.0...2.16.1

Release for the 2023 nbS1 physiology publication

update file link in README

Change-Id: I330c6163f2981eb48c9b1e4fbe5706bf69f15bba