3.6.0

What's Changed

• Read modifications list from libsonata API by @WeinaJi in #181
• [BBPBGLIB-975] Improved "signal" shot noise parameterization by @seirios in #187
• ChangeLog 3.6.0 by @jorblancoa in #188

New Contributors

• @seirios made their first contribution in #187

Full Changelog: 3.5.0...3.6.0

3.5.0

What's Changed

• Replay with NetCons in CoreNEURON as in NEURON by @WeinaJi in #173
• [BBPBGLIB-1167] Automatic balance loading and on-the-fly rebalance by @st4rl3ss in #178
• [BBPBGLIB-1175] Handle deleted sections correctly by @WeinaJi in #182
• Update ngv test to use V10 emodels by @WeinaJi in #183
• [BBPBGLIB-854] Implement a CLI option to run coreneuron in direct mode without writing model data to disk by @WeinaJi in #100
• Allow API configuration to preserve the axons during setup by @ferdonline in #155
• Change log 3.5.0 by @WeinaJi in #184

Full Changelog: 3.4.0...3.5.0

3.4.0

What's Changed

• [BBPBGLIB-1141] Remove HDF5reader.mod which is already replaced by libsonata by @WeinaJi in #162
• Optimize Dockerfile a bit by @matz-e in #176
• [BBPBGLIB-1152] Multi-cycle support for dry run estimate and instantiation by @st4rl3ss in #171
• Accurate synapse counts in dry-run (respect src target) by @ferdonline in #169
• Remove VecStim to use the version in neurodamus-models by @WeinaJi in #177
• Change log 3.4.0 by @WeinaJi in #179

Full Changelog: 3.3.0...3.4.0

3.3.0

What's Changed

• [BBPBGLIB-1137] Account for nonzero total current when using SEClamp; allow nonzero total current when simulating physical electrodes by @joseph-tharayil in #134
• Fix record_spikes for load balancing by @WeinaJi in #167
• Cache dependent packages in GH actions workflow by @WeinaJi in #166
• Add tests for python 3.9 to 3.12 by @jorblancoa in #124
• Avoid calling cleanup from destructor by @ferdonline in #168
• Trigger workflow when pushing to main by @WeinaJi in #172
• Tests with subprocess should capture streams by @ferdonline in #164
• [BBPBGLIB-1158] Add empirical mechanism to estimate simulation memory usage by @st4rl3ss in #165
• [BBPBGLIB-1122] Removing legacy RNGs, leaving only Random123 by @atemerev in #136
• [BBPBGLIB-739] Override UTF-8 for logging by @atemerev in #147
• ChangeLog 3.3.0 by @WeinaJi in #174

Full Changelog: 3.2.1...3.3.0

3.2.1

What's Changed

• Remove Report.hoc reference by @jorblancoa in #158
• [BBPBGLIB-1153] Allow disabling reports from SONATA config by @kbvw in #159
• Fix dead link from CONTRIBUTING.md to README.rst by @kbvw in #160
• [BBPBGLIB-1154] Add information about CORENEURONLIB in the Docker README by @WeinaJi in #161
• ChangeLog 3.2.1 by @WeinaJi in #163

New Contributors

• @kbvw made their first contribution in #159

Full Changelog: 3.2.0...3.2.1

3.2.0

What's Changed

• [BBPBGLIB-1139] Missing exception logging on configuration errors by @atemerev in #142
• Clean up wheel contents. by @matz-e in #144
• Hotfix to solve crashes when running on certain amount of ranks by @st4rl3ss in #141
• [BBPGBLIB-1147] Fixes crashes with KeyError when running sonataconf-sscx-O1 circuit on dry run by @st4rl3ss in #149
• Replay with SONATA spikes files by @WeinaJi in #150
• Update docker file with the new data location by @WeinaJi in #153
• Update online-lfp.rst by @joseph-tharayil in #152
• [BBPBGLIB-1145] Write gids without offset in WholeCell LB complexity file by @jorblancoa in #148
• [BBPGLIB-1148] Add support for gap junctions in dry run by @st4rl3ss in #151
• [BBPBGLIB-1057] Replace Report.hoc by report.py by @jorblancoa in #145
• ChangeLog 3.2.0 by @WeinaJi in #154

New Contributors

• @joseph-tharayil made their first contribution in #152

Full Changelog: 3.1.1...3.2.0

3.1.1

What's Changed

• Fix fetching error in GH workflow triggered by tag and ChangeLog for 3.1.1 by @WeinaJi in #139

Full Changelog: 3.1.0...3.1.1

3.1.0

What's Changed

• Fix unit tests by @WeinaJi in #119
• [BBPBGLIB-1120] Remove node loaders for MVD3 and NCS by @WeinaJi in #117
• [BBPBGLIB-1124] Remove hoc targets related code by @jorblancoa in #118
• Remove SynapseReader.mod and SynReaderNRN by @WeinaJi in #122
• [BBPBGLIB-1110] Error now raised when executeConfigure is returned with errors by @atemerev in #120
• [BBPBGLIB-1127] Remove SpikeWriter.mod and out.dat by @jorblancoa in #123
• [BBPBGLIB-1102] Add load balance based on dry run estimate by @st4rl3ss in #111
• Use actions/checkout@v4 to use Node 20 by @alkino in #126
• StrEnum not working with older python versions by @jorblancoa in #125
• [BBPBGLIB-1121] Remove BlueConfig parser by @jorblancoa in #127
• [BBPBGLIB-1133] Remove ElectrodeManager.hoc and LookupTableV2.mod by @jorblancoa in #128
• [BBPBGLIB-1135] Move CompartmentMapping to python by @jorblancoa in #133
• [BBPBGLIB-1134] Move ShowProgress.hoc to python by @jorblancoa in #131
• [BBPBGLIB-1132]Replace StimulusManager.hoc with the python classes by @WeinaJi in #132
• On --debug install a hook for NGV to show neuro-glial "spikes" by @ferdonline in #137
• [BBPGLIB-1102] (Part two) Load memory balance from file by @st4rl3ss in #129
• [BBPBGLIB-1125] GH forkflow for building a wheel by @atemerev in #121
• ChangeLog for 3.1.0 by @WeinaJi in #138

New Contributors

• @alkino made their first contribution in #126

Full Changelog: 3.0.0...3.1.0

3.0.0

What's Changed

• Transform setup.py to pyproject.toml by @WeinaJi in #110
• Deprecate BlueConfig p1: Raise errors for BlueConfig configuration files by @WeinaJi in #101
• Remove dependency on mvdtool by @WeinaJi in #112
• [BBPBGLIB-1114] Apply offset to the gids before reading node file by @jorblancoa in #113
• Read synapse parameters in a collective safe manner. by @1uc in #85
• [BBPBGLIB-1115] Fix issue with summation reports and cell target in NEURON by @jorblancoa in #114
• Atemerev/opts config by @atemerev in #115
• ChangeLog for 3.0.0 by @WeinaJi in #116

New Contributors

• @atemerev made their first contribution in #115

Full Changelog: 2.17.0...3.0.0

3.0.0-alpha

What's Changed

• Transform setup.py to pyproject.toml by @WeinaJi in #110
• Deprecate BlueConfig p1: Raise errors for BlueConfig configuration files by @WeinaJi in #101
• Remove dependency on mvdtool by @WeinaJi in #112

Full Changelog: 2.17.0...3.0.0-alpha