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  1. Bonelab Bonelab Public

    Collection of utility software from the Bone Imaging Laboratory

    Python 6 2

  2. Bone_Adaptation_as_Level_Set_Motion Bone_Adaptation_as_Level_Set_Motion Public

    Code accommodating the MICCAI-MSKI conference proceeding.

    C++ 1 1

  3. FemurSegmentation FemurSegmentation Public

    Femur segmentation using bone enhancement filtering and multi label graph cuts

    C++ 9 4

  4. HR-pQCT-Segmentation HR-pQCT-Segmentation Public

    Jupyter Notebook 6 1

  5. Ogo Ogo Public

    Ogo - A library of tools for opportunistic CT, including internal calibration, segmentation, image manipulation and quantitative analysis.

    Python 8 1

  6. tutorial_dl_segmentation tutorial_dl_segmentation Public

    A tutorial for deep learning-based segmentation with PyTorch, PyTorch-Lightning, and the internal bonelab-pytorch-lightning package.

    Jupyter Notebook

Repositories

Showing 10 of 23 repositories
  • bonelab-website Public

    Source code for the Bone Imaging Laboratory website.

    Bonelab/bonelab-website’s past year of commit activity
    HTML 0 BSD-3-Clause 0 0 1 Updated Sep 22, 2025
  • Ogo Public

    Ogo - A library of tools for opportunistic CT, including internal calibration, segmentation, image manipulation and quantitative analysis.

    Bonelab/Ogo’s past year of commit activity
    Python 8 GPL-3.0 1 1 0 Updated Sep 16, 2025
  • spineFE-benchmark Public

    Code and instructions to reproduce the analyses from our study comparing linear and nonlinear finite element models of vertebral strength across the thoracic and lumbar spine using the VERSE19 dataset. Includes image data, results and visualization scripts to support full reproducibility.

    Bonelab/spineFE-benchmark’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 3, 2025
  • Bonelab/bonelab.github.io’s past year of commit activity
    PHP 1 GPL-3.0 1 1 0 Updated Aug 21, 2025
  • Bonelab Public

    Collection of utility software from the Bone Imaging Laboratory

    Bonelab/Bonelab’s past year of commit activity
    Python 6 GPL-3.0 2 4 0 Updated Jul 28, 2025
  • Bonelab/HR-pQCT-Segmentation’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 1 0 0 Updated Jan 28, 2025
  • HRpQCT-Knee-Seg Public

    this repo contains an installable package for doing automated HR-pQCT knee segmentation

    Bonelab/HRpQCT-Knee-Seg’s past year of commit activity
    Python 1 GPL-3.0 0 1 0 Updated Aug 13, 2024
  • Bonelab/BML-MRI-segmentation’s past year of commit activity
    Python 2 0 0 0 Updated Aug 6, 2024
  • hrpqct-knee-segmentation Public

    Scripts for training and testing models with the goal of automating knee contouring. Depends on `bonelab-pytorch-lightning`

    Bonelab/hrpqct-knee-segmentation’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated May 22, 2024
  • bonelab-pytorch-lightning Public

    Tasks, dataset components, loss functions, and utilities for using pytorch lightning for deep learning with medical image data.

    Bonelab/bonelab-pytorch-lightning’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated May 2, 2024

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