deploy: 8e900b2

BradyAJohnston · Dec 20, 2024 · c8102a6 · c8102a6
1 parent e4ddbba
commit c8102a6
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Showing 36 changed files with 9,550 additions and 14,775 deletions.
diff --git a/attributes.html b/attributes.html
diff --git a/examples/st-jude/index.html → cite/index.html b/examples/st-jude/index.html → cite/index.html
diff --git a/data_table.html b/data_table.html
diff --git a/example_animations.html b/example_animations.html
@@ -69,12 +69,10 @@
 <script src="site_libs/quarto-html/tippy.umd.min.js"></script>
 <script src="site_libs/quarto-html/anchor.min.js"></script>
 <link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
-<link href="site_libs/quarto-html/quarto-syntax-highlighting-e26003cea8cd680ca0c55a263523d882.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
-<link href="site_libs/quarto-html/quarto-syntax-highlighting-dark-d166b450ba5a8e9f7a0ab969bf6592c1.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
+<link href="site_libs/quarto-html/quarto-syntax-highlighting-dark-d166b450ba5a8e9f7a0ab969bf6592c1.css" rel="stylesheet" id="quarto-text-highlighting-styles">
 <script src="site_libs/bootstrap/bootstrap.min.js"></script>
 <link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
-<link href="site_libs/bootstrap/bootstrap-93e54f35270aca66d329afb80d8ff36c.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
-<link href="site_libs/bootstrap/bootstrap-dark-7fa46df21d206f30e506ca35283d1c6c.min.css" rel="prefetch" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
+<link href="site_libs/bootstrap/bootstrap-7b09a6762b63b1f90f8d377a35735782.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="dark">
 <script id="quarto-search-options" type="application/json">{
   "location": "navbar",
   "copy-button": false,
@@ -104,7 +102,6 @@
 }</script>
 
 
-<link rel="stylesheet" href="styles.css">
 </head>
 
 <body class="nav-fixed">
@@ -133,20 +130,23 @@
 <span class="menu-text">Tutorials</span></a>
   </li>  
   <li class="nav-item">
-    <a class="nav-link" href="./nodes/"> 
-<span class="menu-text">Node Documentation</span></a>
+    <a class="nav-link" href="./attributes.html"> 
+<span class="menu-text">Documentation</span></a>
   </li>  
   <li class="nav-item">
     <a class="nav-link" href="./examples/"> 
 <span class="menu-text">Examples</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./cite/"> 
+<span class="menu-text">Citations</span></a>
+  </li>  
 </ul>
           </div> <!-- /navcollapse -->
             <div class="quarto-navbar-tools tools-wide">
     <a href="https://github.com/BradyAJohnston/MolecularNodes" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-github"></i></a>
     <a href="https://twitter.com/bradyajohnston" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-twitter"></i></a>
     <a href="https://youtube.com/c/bradyjohnston" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-youtube"></i></a>
-  <a href="" class="quarto-color-scheme-toggle quarto-navigation-tool  px-1" onclick="window.quartoToggleColorScheme(); return false;" title="Toggle dark mode"><i class="bi"></i></a>
 </div>
       </div> <!-- /container-fluid -->
     </nav>
@@ -305,150 +305,6 @@ <h3 data-number="2.4" class="anchored" data-anchor-id="geometry-nodes"><span cla
     }
   }
   toggleBodyColorPrimary();  
-  const disableStylesheet = (stylesheets) => {
-    for (let i=0; i < stylesheets.length; i++) {
-      const stylesheet = stylesheets[i];
-      stylesheet.rel = 'prefetch';
-    }
-  }
-  const enableStylesheet = (stylesheets) => {
-    for (let i=0; i < stylesheets.length; i++) {
-      const stylesheet = stylesheets[i];
-      stylesheet.rel = 'stylesheet';
-    }
-  }
-  const manageTransitions = (selector, allowTransitions) => {
-    const els = window.document.querySelectorAll(selector);
-    for (let i=0; i < els.length; i++) {
-      const el = els[i];
-      if (allowTransitions) {
-        el.classList.remove('notransition');
-      } else {
-        el.classList.add('notransition');
-      }
-    }
-  }
-  const toggleGiscusIfUsed = (isAlternate, darkModeDefault) => {
-    const baseTheme = document.querySelector('#giscus-base-theme')?.value ?? 'light';
-    const alternateTheme = document.querySelector('#giscus-alt-theme')?.value ?? 'dark';
-    let newTheme = '';
-    if(darkModeDefault) {
-      newTheme = isAlternate ? baseTheme : alternateTheme;
-    } else {
-      newTheme = isAlternate ? alternateTheme : baseTheme;
-    }
-    const changeGiscusTheme = () => {
-      // From: https://github.com/giscus/giscus/issues/336
-      const sendMessage = (message) => {
-        const iframe = document.querySelector('iframe.giscus-frame');
-        if (!iframe) return;
-        iframe.contentWindow.postMessage({ giscus: message }, 'https://giscus.app');
-      }
-      sendMessage({
-        setConfig: {
-          theme: newTheme
-        }
-      });
-    }
-    const isGiscussLoaded = window.document.querySelector('iframe.giscus-frame') !== null;
-    if (isGiscussLoaded) {
-      changeGiscusTheme();
-    }
-  }
-  const toggleColorMode = (alternate) => {
-    // Switch the stylesheets
-    const alternateStylesheets = window.document.querySelectorAll('link.quarto-color-scheme.quarto-color-alternate');
-    manageTransitions('#quarto-margin-sidebar .nav-link', false);
-    if (alternate) {
-      enableStylesheet(alternateStylesheets);
-      for (const sheetNode of alternateStylesheets) {
-        if (sheetNode.id === "quarto-bootstrap") {
-          toggleBodyColorMode(sheetNode);
-        }
-      }
-    } else {
-      disableStylesheet(alternateStylesheets);
-      toggleBodyColorPrimary();
-    }
-    manageTransitions('#quarto-margin-sidebar .nav-link', true);
-    // Switch the toggles
-    const toggles = window.document.querySelectorAll('.quarto-color-scheme-toggle');
-    for (let i=0; i < toggles.length; i++) {
-      const toggle = toggles[i];
-      if (toggle) {
-        if (alternate) {
-          toggle.classList.add("alternate");     
-        } else {
-          toggle.classList.remove("alternate");
-        }
-      }
-    }
-    // Hack to workaround the fact that safari doesn't
-    // properly recolor the scrollbar when toggling (#1455)
-    if (navigator.userAgent.indexOf('Safari') > 0 && navigator.userAgent.indexOf('Chrome') == -1) {
-      manageTransitions("body", false);
-      window.scrollTo(0, 1);
-      setTimeout(() => {
-        window.scrollTo(0, 0);
-        manageTransitions("body", true);
-      }, 40);  
-    }
-  }
-  const isFileUrl = () => { 
-    return window.location.protocol === 'file:';
-  }
-  const hasAlternateSentinel = () => {  
-    let styleSentinel = getColorSchemeSentinel();
-    if (styleSentinel !== null) {
-      return styleSentinel === "alternate";
-    } else {
-      return false;
-    }
-  }
-  const setStyleSentinel = (alternate) => {
-    const value = alternate ? "alternate" : "default";
-    if (!isFileUrl()) {
-      window.localStorage.setItem("quarto-color-scheme", value);
-    } else {
-      localAlternateSentinel = value;
-    }
-  }
-  const getColorSchemeSentinel = () => {
-    if (!isFileUrl()) {
-      const storageValue = window.localStorage.getItem("quarto-color-scheme");
-      return storageValue != null ? storageValue : localAlternateSentinel;
-    } else {
-      return localAlternateSentinel;
-    }
-  }
-  const darkModeDefault = false;
-  let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
-  // Dark / light mode switch
-  window.quartoToggleColorScheme = () => {
-    // Read the current dark / light value 
-    let toAlternate = !hasAlternateSentinel();
-    toggleColorMode(toAlternate);
-    setStyleSentinel(toAlternate);
-    toggleGiscusIfUsed(toAlternate, darkModeDefault);
-  };
-  // Ensure there is a toggle, if there isn't float one in the top right
-  if (window.document.querySelector('.quarto-color-scheme-toggle') === null) {
-    const a = window.document.createElement('a');
-    a.classList.add('top-right');
-    a.classList.add('quarto-color-scheme-toggle');
-    a.href = "";
-    a.onclick = function() { try { window.quartoToggleColorScheme(); } catch {} return false; };
-    const i = window.document.createElement("i");
-    i.classList.add('bi');
-    a.appendChild(i);
-    window.document.body.appendChild(a);
-  }
-  // Switch to dark mode if need be
-  if (hasAlternateSentinel()) {
-    toggleColorMode(true);
-  } else {
-    toggleColorMode(false);
-  }
   const icon = "";
   const anchorJS = new window.AnchorJS();
   anchorJS.options = {