BUG: Remove obsolete VRG Generation functionality

Removes the 'Manual Camera Placement' and 'Automatic Camera Placement'
VRG Generation UI groups from the Pre-Processing modules, along with all
of their associated backend code. This includes the removal of the
CalculateDataIntensityDensity and VirtualRadiographGeneration modules.

AutoscoperM/AutoscoperMLib/IO.py

@@ -7,8 +7,6 @@
 import slicer
 import vtk
 
-from .RadiographGeneration import Camera
-
 
 def loadSegmentation(segmentationNode: slicer.vtkMRMLSegmentationNode, filename: str):
     """
@@ -35,34 +33,6 @@ def loadSegmentation(segmentationNode: slicer.vtkMRMLSegmentationNode, filename:
         return None
 
 
-def generateCameraCalibrationFile(camera: Camera, filename: str):
-    """
-    Generates a VTK camera calibration json file from the given camera.
-
-    :param camera: Camera
-    :param filename: Output file name
-    """
-    import json
-
-    contents = {}
-    contents["@schema"] = "https://autoscoperm.slicer.org/vtkCamera-schema-1.0.json"
-    contents["version"] = 1.0
-    contents["focal-point"] = camera.vtkCamera.GetFocalPoint()
-    contents["camera-position"] = camera.vtkCamera.GetPosition()
-    contents["view-up"] = camera.vtkCamera.GetViewUp()
-    contents["view-angle"] = camera.vtkCamera.GetViewAngle()
-    contents["image-width"] = camera.imageSize[0]
-    contents["image-height"] = camera.imageSize[1]
-    # The clipping-range field is not used by Autoscoper, it is used to communicate
-    # information between AutoscoperM and VirtualRadiographGeneration modules within Slicer.
-    contents["clipping-range"] = camera.vtkCamera.GetClippingRange()
-
-    contents_json = json.dumps(contents, indent=4)
-
-    with open(filename, "w+") as f:
-        f.write(contents_json)
-
-
 def generateConfigFile(
     mainDirectory: str,
     subDirectories: list[str],
@@ -265,7 +235,7 @@ def writeTRA(fileName: str, transforms: list[vtk.vtkMatrix4x4]) -> None:
             traFile.write(",".join(row) + "\n")
 
 
-def writeTemporyFile(filename: str, data: vtk.vtkImageData) -> str:
+def writeTemporaryFile(filename: str, data: vtk.vtkImageData) -> str:
     """
     Writes a temporary file to the slicer temp directory
 
@@ -285,7 +255,7 @@ def writeTemporyFile(filename: str, data: vtk.vtkImageData) -> str:
     return writer.GetFileName()
 
 
-def removeTemporyFile(filename: str):
+def removeTemporaryFile(filename: str):
     """
     Removes a temporary file from the slicer temp directory
 

AutoscoperM/CMakeLists.txt

@@ -6,7 +6,6 @@ set(MODULE_PYTHON_SCRIPTS
   ${MODULE_NAME}.py
   ${MODULE_NAME}Lib/__init__.py
   ${MODULE_NAME}Lib/IO.py
-  ${MODULE_NAME}Lib/RadiographGeneration.py
   ${MODULE_NAME}Lib/SubVolumeExtraction.py
   )