Skip to content
View BulutHamali's full-sized avatar

Block or report BulutHamali

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
BulutHamali/README.md

Hello! 👋 I’m Bulut Hamali, a dedicated computational biologist with over a decade of experience in molecular biology and a deep fascination with the complexities of genomics. Below is a snapshot of my professional toolkit and interests:

  • Programming Proficiency: Skilled in Python, R, and with a strong emphasis on applying these languages to solve complex biological problems.
  • Bioinformatics Tools: Proficient with essential tools such as BLAST, BEDTools, GATK, and SAMtools. Regular user of Bioconductor for genomic analysis.
  • NGS Expertise: Extensive experience in analyzing next-generation sequencing data, using pipelines such as BWA, Bowtie, and STAR for diverse studies including RNA-seq and ChIP-seq.
  • Visualization Skills: Adept in data visualization using ggplot in R and Matplotlib in Python, creating clear and impactful representations of complex data.
  • Cloud Computing: Utilize cloud platforms like AWS and Google Cloud for scalable bioinformatics workflows and data management.
  • Containerization Tools: Familiar with Docker and Singularity to maintain reproducible computing environments across various projects.
  • Workflow Automation: Use workflow management tools like Nextflow and Snakemake to streamline and automate bioinformatics processes.
  • Scientific Communication: Committed to clear and effective scientific communication, with experience in preparing publications and presenting at scientific conferences.

I am always excited to embark on new projects and collaborations that push the boundaries of what we can discover in computational biology. Feel free to reach out if you’re interested in collaborating or have questions about my work! 🚀

Email: bioinformaticsuniverse@gmail.com


🧰 Languages and Tools

Python

Linux

Git

Vscode

R

Bash

JavaScript


Pinned Loading

  1. scRNAseq-Pipeline-GastricCancer scRNAseq-Pipeline-GastricCancer Public

    Reconstruction and augmentation of the Wang B. et al. (2021) paper's computational framework for dissecting metastatic gastric cancer through their provided single-cell transcriptomics dataset.

    Jupyter Notebook

  2. GATK-Based-Variant-Calling-and-Analysis-on-Chromosome-17 GATK-Based-Variant-Calling-and-Analysis-on-Chromosome-17 Public

    This repository contains a comprehensive pipeline for germline variant calling and analysis using the Genome Analysis Toolkit (GATK).