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@iksheth iksheth released this 08 Jan 15:59
· 3 commits to main since this release
1.3.0.184
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Learn about vigilant mode. 
    Release Notes - CCDI C3DC - Version C3DC Release 4

Test

  • [C3DC-883] - Test - Warning banner upon landing on all pages of C3DC
  • [C3DC-961] - Test - Announcement Page Tabs and Cards content
  • [C3DC-1048] - Test - All button and dropdown for Cohort creation available on all tabs except Studies
  • [C3DC-1049] - Test - User can see and edit all cohorts using "View All Cohorts" button
  • [C3DC-1056] - Test - Data Update page title and stats of listed studies for Data Release 4.0
  • [C3DC-1112] - Test - Data Update page title and stats of listed studies for Data Release 3.0
  • [C3DC-1113] - Test - Data Update page title and stats of listed studies for Data Release 2.0
  • [C3DC-1114] - Test - Data Update page title and stats of listed studies for Data Release 1.0
  • [C3DC-1144] - Test - User can downlaod Manifest CSV and Metadata JSON for any given cohort
  • [C3DC-1217] - Test - Warning message for any unsaved activity on "View All Cohorts" pop-up window
  • [C3DC-1223] - Test - User can see and edit all cohorts on Cohort Analyzer Tab

Test Execution

  • [C3DC-1149] - C3DC - Final Regression Testing Execution Suite for Release 4
  • [C3DC-1164] - C3DC - Sprint 24 Test Execution Suite

Sub-task

Epic

  • [C3DC-607] - Cohort Selector Phase 1 - Release 4
  • [C3DC-1043] - Cohort Analyzer (Iteration 2 and 3) - Release 5
  • [C3DC-1201] - Cohort Selector and Analyzer (development continuation) - Release 6

Bug

  • [C3DC-672] - "The Age at diagnosis" and "Age at last known survival status "default values for the selected studies show the number of participants different than the ne04j participants queried with the same age range.
  • [C3DC-731] - Fix Release Note and User Guide document page numbers to start from page 1
  • [C3DC-800] - change link-out from SP to CCDI Hub url
  • [C3DC-801] - UI update based on data model diffs
  • [C3DC-844] - Explore page -> Participant and Diagnosis tabs. when the data reaches the 10000 record, the records in the table does not changed
  • [C3DC-855] - Explore Page Filters are showing incorrect participant counts
  • [C3DC-866] - C3DC Download file from all tabs on the table has Study ID and DbGap accession fields present on it
  • [C3DC-933] - Explore page -> Fix column headers inconsistency issue for Treatment and Treatment Response result tabs
  • [C3DC-934] - Explore page -> Treatment tab -> data should not be displayed in the form of array for Treatment Agent column
  • [C3DC-935] - Explore page -> Treatment tab -> data should not be displayed as "-999" for Age related columns
  • [C3DC-936] - Explore page -> Treatment tab displays 0 data whereas Treatment Response tab displays data for the same participants.
  • [C3DC-940] - Download File -> Remove "acl" property from studies tab downloaded file
  • [C3DC-942] - Studies page -> unexpected download button is appearing on Studies page
  • [C3DC-943] - Explore page -> Change the default sorting behavior for Treatment and Treatment Response tabs
  • [C3DC-944] - Data Issue -> Duplicate checkboxes are appearing for "Treatment Agent" facet
  • [C3DC-945] - Download File -> Change download file name for Treatment and Treatment Response tabs
  • [C3DC-946] - Warning Banner is too small
  • [C3DC-966] - Update download with study_id instead of dbgap_accession
  • [C3DC-967] - Update missing column values in Survival and Diagnosis tables
  • [C3DC-973] - Home page -> When user clicks on "Explore Announcement" button on home page, user lands on the last section of announcement page
  • [C3DC-994] - Download File -> Add missing values of Survival tab download file
  • [C3DC-997] - Sidebar Filter -> Under cause of death facet a check box apears without any label
  • [C3DC-998] - Sidebar Filter -> No data displays when user select "Treatment Agent" as "Alemtuzumab"
  • [C3DC-1000] - Sidebar Filter -> When user selects "Treatment Agent" as "Asparaginase", Participants count do not match between Statbar, and Facet
  • [C3DC-1001] - Explore page-> Survival tab -> Sorting order is not working for "Cause of Death" column
  • [C3DC-1015] - Sidebar Filter -> When user selects "Cause of Death" as "Not Reported", Participants count do not match between Statbar, and Facet
  • [C3DC-1016] - Download File -> Treatment tab -> Treatment Agent column data downloads in square brackets
  • [C3DC-1017] - Release Notes -> Stat values are missing for data release 4 notes
  • [C3DC-1031] - Study Details page - Guidelines description is missing from Target related studies
  • [C3DC-1050] - Create Cohort - Update verbiage for Create Cohort tooltip for all tabs
  • [C3DC-1051] - Cohort - When user creates a cohort with long ID, it overlaps the list of other cohorts
  • [C3DC-1052] - Cohort - When user creates a new cohort, by default the old cohort should not be selected
  • [C3DC-1053] - Cohort - When user creates a cohort with long ID, it overlaps the "Add Participants to Existing Cohort" dropdown list
  • [C3DC-1054] - Cohort - Clicking outside of "Add Participants to Existing Cohort" dropdown do not close the menu
  • [C3DC-1055] - Cohort - When user adds long descriptions to a cohort, user can not rename it as the pencil icon hids under search box
  • [C3DC-1058] - Remove PPTC (phs001437) from Data Updates and Announcements Data Tab
  • [C3DC-1059] - Cohort - No confirmation message appear when user removes all participants from a cohort
  • [C3DC-1060] - Cohort - No confirmation message appear when user removes a cohort
  • [C3DC-1061] - Treatment Tab - Multiple "Treatment Agent" data for single participants should seprated with a comma and a space
  • [C3DC-1062] - Cohort - Creating cohort from multiple pages using select all rows button do not add all selected data to the cohort
  • [C3DC-1063] - Cohort - Hovering over list of cohorts and table headers do not change the cursor to hand pointer
  • [C3DC-1064] - Cohort - Mislabeled download buttons
  • [C3DC-1065] - Cohort - Downloading manifest from a selected cohort do not export all participants' data to csv
  • [C3DC-1066] - Cohort - Wrong count notification displays when adding duplicate data to an existing cohort
  • [C3DC-1067] - Download File -> Fix undefined and missing values for Treatment and Treatment Response tab download file
  • [C3DC-1074] - Cohort - Update verbiage for Cohort tooltips for all tabs
  • [C3DC-1075] - Download File -> Fix data export issue of Studies tab download file
  • [C3DC-1078] - Data Release -> Data release notes show unexpected data
  • [C3DC-1086] - Data Updates -> Data release 4.0 is showing incorrect stats for phs002517
  • [C3DC-1087] - Data Updates -> Change Diagnosis to Diagnoses for all studies on data updates pages
  • [C3DC-1088] - Automation - Add id attribute to the DOM for all result tab tables for test automation purpose
  • [C3DC-1089] - Cohort Download- User is not able to download manifest and metadata from a cohort of 7000 participants
  • [C3DC-1090] - Download File -> User is not able to download data as CSV from Treatment & Treatment Response tabs
  • [C3DC-1091] - Update caDSR under Resource
  • [C3DC-1092] - Cohort - When user clicks "Manifest CSV" or "Metadata JSON" from cohort download, The dropdown stays open
  • [C3DC-1101] - Explore Page - When user selects first event as "Not Reported" filter is showing incorrect count

User Story

  • [C3DC-327] - C3DC End User wants to download data from tables as json files
  • [C3DC-420] - Backend Services Vulnerabilities
  • [C3DC-736] - Explore Page Table tabs - add new Nodes: Treatment and Treatment Response
  • [C3DC-737] - Explore Page Facets need to have new Nodes added: Treatment and Treatment Response
  • [C3DC-738] - Updated Data Model Node addition needs BE attention
  • [C3DC-744] - C3DC - Announcement Page Design - Release 4
  • [C3DC-764] - add property cause_of_death to survival node in the sidebar filter (left side)
  • [C3DC-782] - Prepare the Explore page table section with buttons and checkboxes for Cohort Creation and extra participant additions to cohorts
  • [C3DC-783] - Prepare the Explore page edit and delete functionality for the button for VIEW ALL COHORTS
  • [C3DC-785] - Create new queries for the Cohort Selector Buttons
  • [C3DC-797] - Provide Datasets to U. Chicago - Sprint 17
  • [C3DC-810] - Data Model and documentation Update - Sprint 18
  • [C3DC-811] - Provide Datasets to U. Chicago - Sprint 18
  • [C3DC-820] - Schedule Management - Release 4 - Sprint 18
  • [C3DC-824] - Compare node types and properties of CCDI 1.9.1 vs C3DC 1.2.0 template to guide C3DC changes
  • [C3DC-825] - Remove Acronym Property from the Study Node - Release 4
  • [C3DC-826] - Remove Existing Download button in Explore page table and implement a smaller icon with a tooltip - Release 4
  • [C3DC-832] - C3DC - Announcement Page Tabs and Cards Implementation - Release 4
  • [C3DC-835] - Add a warning banner upon landing on the all pages of C3DC - Release 4
  • [C3DC-841] - Data Model and documentation Update - Sprint 19
  • [C3DC-842] - Schedule Management - Release 4 - Sprint 19
  • [C3DC-843] - Provide Datasets to U. Chicago - Sprint 19
  • [C3DC-852] - Final updates of Documentation related to Release 4
  • [C3DC-854] - Make changes to the Home Page -> Info Block -> change "New Datasets" to "Announcements" and add green button
  • [C3DC-859] - Check harmonized data received from UChicago - Sprint 20 - Release 4
  • [C3DC-860] - Transform final Harmonized files from JSON files to TSV files - Release 4 - Sprint 19
  • [C3DC-869] - Add property "cause of death" to Survival Node to Survival tab in Explore page
  • [C3DC-881] - Implement CloudFront for S3 File Serving to Reduce Costs and Control Downloads
  • [C3DC-884] - Provide Datasets to U. Chicago - Sprint 20
  • [C3DC-885] - Schedule Management - Release 4 - Sprint 20
  • [C3DC-886] - Transform final Harmonized files from JSON files to TSV files - Release 4 - Sprint 21
  • [C3DC-887] - Data Model and documentation Update - Sprint 20
  • [C3DC-891] - C3DC - Announcement Page - Data Update Implementation - Release 4
  • [C3DC-892] - C3DC - Navigation Bar Changes Implementation - Release 4
  • [C3DC-904] - Remove Property Study acl
  • [C3DC-909] - C3DC End User wants to download data from tables as json files related to C3DC Data Model 1.3.0
  • [C3DC-928] - Remove Participant -> Ethnicity from all places on the C3DC site FE and BE
  • [C3DC-931] - Add Treatment Widget to Explore Page in light of removal of Ethnicity Widget
  • [C3DC-949] - Nav bar -->"About" choice needs realignment
  • [C3DC-952] - Data Model and documentation Update - Sprint 21
  • [C3DC-953] - Check harmonized data received from UChicago - Sprint 21 - Release 4
  • [C3DC-974] - Add study_id in addition to dbgap_accession- Table Tab Download
  • [C3DC-985] - About --> Announcement --> Release Notes needs to point to a pdf version of the Release Notes and not to the Data Update page
  • [C3DC-986] - Modify MCI Data
  • [C3DC-1011] - Check harmonized data received from UChicago - Sprint 21 - Release 4
  • [C3DC-1018] - C3DC needs a Potential Government Shutdown banner
  • [C3DC-1020] - Modify CHOP dataset - remove patients from dataset phs002517
  • [C3DC-1022] - Data Model and documentation Update - Sprint 22
  • [C3DC-1023] - Update CloudFront Links for Target Data Sets in Study Details Page (Release 4)
  • [C3DC-1026] - Manual Edits Required for UChicago Harmonized JSON Files
  • [C3DC-1028] - Update data file links for TARGET datasets to CloudFront links
  • [C3DC-1076] - Raise a netsparker scan request on Stage Tier - Release 4
  • [C3DC-1077] - frontend and backend Service Vulnerabilities
  • [C3DC-1081] - Deploy C3DC Release 4 to Stage tier
  • [C3DC-1082] - Deploy C3DC Release 4 to Prod tier

Task

  • [C3DC-658] - Add green link-out button on the Home Page, Info Block, top right section
  • [C3DC-685] - Investigate Automating Opensearch Snapshot Deployment
  • [C3DC-689] - Update Transformation Script for New Datamodel
  • [C3DC-745] - Implement Backend API for Treatment Tab on Explore Page
  • [C3DC-746] - Implement Backend API for Treatment Response Tab on Explore Page
  • [C3DC-754] - Add Treatment and Treatment Response Tabs to the Explore page Table
  • [C3DC-767] - Implement Backend API for Treatment/Treatment Response Facets
  • [C3DC-780] - phs002517 XO1 vital_status inconsistency
  • [C3DC-796] - Prepare Code Base for Release 4
  • [C3DC-828] - CCDI 1.9.1 vs C3DC 1.2.0
  • [C3DC-833] - Run U. Chicago's Harmonization script and compare our output to their output (PART 2)
  • [C3DC-836] - Announcement Page - Content
  • [C3DC-851] - Create update for Release Notes for Release 4
  • [C3DC-853] - Create update for User Guide for Release 4
  • [C3DC-856] - Schedule Management - Release 4
  • [C3DC-857] - Transform harmonized data from July 12th to use as mock data for developers to use to add 2 new nodes
  • [C3DC-862] - Remove "Acronym" from filter facets (Sidebar on the left)
  • [C3DC-863] - Remove "Acronym" from Studies Tab - Explore Page
  • [C3DC-864] - Remove Acronym Property from Backend
  • [C3DC-865] - Remove Acronym Property from Data Model
  • [C3DC-867] - Add a warning banner upon landing on all pages of C3DC
  • [C3DC-868] - Add property "cause of death" to Survival Node in the sidebar filter (left side)
  • [C3DC-870] - Add property "cause of death" to Survival Node in the BE
  • [C3DC-871] - Removed PV from CDE 7572817 (Person Sex at Birth Category), versioned CDE to 2.0
  • [C3DC-872] - treatment_type enum additions for MCI
  • [C3DC-873] - Implement a dropdown UI component for "Table Data Download as CSV" near the pagination area
  • [C3DC-876] - Remove study.acl from C3DC model
  • [C3DC-877] - Add diagnosis properties
  • [C3DC-878] - Investigation and Notification of 1.3.0 Data Model changes to FE and BE know what to do
  • [C3DC-879] - Implement a dropdown UI component for "Table Data Download as JSON" near the pagination area
  • [C3DC-880] - Update caDSR count of CDEs and change caDSR url on the Resource page
  • [C3DC-882] - Add Facets and Styling for Facets for Treatment and Treatment Response
  • [C3DC-888] - Worked on creating S3 buckets for data exchange between Uchicago and Us
  • [C3DC-889] - Update treatment_agent to be a type: list
  • [C3DC-890] - Delete diagnosis properties: age_at_recurrence, tumor_grade_source, tumor_stage_source, last_known_disease_status, and age_at_last_known_disease_status
  • [C3DC-894] - replace non-standard double quotes
  • [C3DC-895] - Inform Frontend Team of Datamodel Changes
  • [C3DC-899] - Add property "cause of death" to Survival Node to Survival tab in Explore page
  • [C3DC-900] - Add Cause of Death facet
  • [C3DC-901] - Remove the Ethnicity Facet and Column from Participant
  • [C3DC-902] - Remove Participants.ethnicity
  • [C3DC-903] - Remove Study.acl
  • [C3DC-905] - Fix sliders for Treatment and Treatment Response
  • [C3DC-906] - Add Tooltip on side of Table Download Dropdown
  • [C3DC-907] - Backend API for Treatment Type Widget
  • [C3DC-908] - Remove Property Study acl from UI.
  • [C3DC-910] - Announcement page
  • [C3DC-911] - Backend API for Downloading Cohorts
  • [C3DC-920] - Update CDE for Disease French-American-British Classification System Type
  • [C3DC-922] - Provide Dataset phs003432 CHOP B- and T-cell to U. Chicago
  • [C3DC-925] - Add Announcements to Navbar
  • [C3DC-926] - Provide Release Notes content
  • [C3DC-927] - Investigation and Notification of 1.3.0 Data Model changes to FE and BE know what to do - Release 5
  • [C3DC-932] - decide on widget order when replacing Ethnicity with Treatment
  • [C3DC-937] - Update PVs for 14737565 Therapeutic Procedure Performed Type
  • [C3DC-938] - Add Cause of Death
  • [C3DC-947] - Add Treatment Type query and widget to frontend
  • [C3DC-948] - create github repos for each tier to host the Release note verbiage
  • [C3DC-950] - provide verbiage for Home Page new Announcements section
  • [C3DC-951] - change the Home page info block title "Announcement" to "Announcements" and in the page url
  • [C3DC-955] - Implement Data Update Page
  • [C3DC-957] - Implement Multi-Row Selection with Checkboxes in the Leftmost Column for Tabs
  • [C3DC-958] - Implement View All Cohort Pop-Out
  • [C3DC-959] - Left Section: Cohort(s) List - View All Cohorts
  • [C3DC-960] - Right Section - Cohort Details - View All Cohorts
  • [C3DC-962] - Implement Cohort Selector Button Components
  • [C3DC-963] - Add Participants to Existing Cohort
  • [C3DC-964] - Create Cohort Selector Storage Functions
  • [C3DC-970] - Create C3DC Validation workflow
  • [C3DC-972] - Improve Navigation Bar with 4 Items in a Row
  • [C3DC-983] - Backend API - Add Study ID to Treatment/Response Results
  • [C3DC-984] - Update Transformation Script for Release 4 Data Ingestion
  • [C3DC-999] - Backend API - Primary Keys for Table Rows
  • [C3DC-1002] - Remove Participant Data for Release 4
  • [C3DC-1003] - MCI has Treatment and Treatment Response data that U. Chicago did not return to us which should be loaded
  • [C3DC-1004] - Backend API for Cohort Metadata Download
  • [C3DC-1005] - Backend API for Cohort Manifest Download
  • [C3DC-1006] - Link out to release note PDF page on the announcement page
  • [C3DC-1009] - Load Final Harmonized Data - Release 4
  • [C3DC-1010] - QC newly added MCI data in-house by Data Curation team prior to ingestion
  • [C3DC-1012] - update Target Dataset datafile links for Release 4
  • [C3DC-1013] - Investigate how to store url information for datafiles hosted on CloudFront
  • [C3DC-1014] - place standard TARGET verbiage to the Studies detail page for new TARGET-CCSK dataset phs#000466
  • [C3DC-1019] - Link-out to OCPLs Potential Government Shutdown banner
  • [C3DC-1021] - Remove participants from CHOP's dataset phs002517
  • [C3DC-1024] - QC data files after 60+ participants from phs002517 are removed
  • [C3DC-1027] - Font size and verbiage update
  • [C3DC-1033] - Make Manual Edits Required for UChicago Harmonized JSON Files
  • [C3DC-1083] - Remove the word "REMOVE" from the View All Cohort pop-up, right panel
  • [C3DC-1148] - Fix Vulnerabilities
  • [C3DC-1271] - Remove Participants from phs002517
  • [C3DC-1273] - Remove Participants from phs002790
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